Gene omics information

Query gene ID	Contig3675_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.95	99.2	Contig3675_at	Contig3675	-	-	2e-10	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	S.X.	H.G.	Please select
0.71	87.1	Contig14763_at	Contig14763	-	-	2e-1	At2g37510	RNA-binding protein, putative	S.X.	H.G.	Please select
0.69	85.5	Contig23732_at	Contig23732	-	-	6e-1	At1g05190	emb2394 (embryo defective 2394)	S.X.	H.G.	Please select
0.67	84.7	Contig24497_at	Contig24497	-	-	3e+0	At5g36910	THI2.2 (THIONIN 2.2)	S.X.	H.G.	Please select
0.67	84.7	Contig20936_at	Contig20936	-	-	3e-5	At3g21175	ZML1 (ZIM-LIKE 1)	S.X.	H.G.	Please select
0.65	81.4	HM01F24T_s_at	HM01F24T	-	-	4e-5	At2g33370	60S ribosomal protein L23 (RPL23B)	S.X.	H.G.	Please select
0.62	79.1	Contig22905_at	Contig22905	-	-	4e-1	At2g34480	60S ribosomal protein L18A (RPL18aB)	S.X.	H.G.	Please select
0.61	78.7	Contig2738_s_at	Contig2738	-	-	2e-1	At4g27820	BGLU9 (BETA GLUCOSIDASE 9)	S.X.	H.G.	Please select
0.61	78.7	Contig19492_at	Contig19492	-	-	5e-1	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	S.X.	H.G.	Please select
0.58	74.9	Contig26480_at	Contig26480	-	-	2e+0	At1g62070	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.2	99.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
16.8	99.6	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
14.5	99.5	GSM261041	Dicktoo-deacclimation-rep3	GSE10329	Low temperature stress in cv. Dicktoo
13.2	99.4	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
12.5	99.4	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
12.5	99.4	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
10.3	99.1	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
10.1	99.1	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
9.2	99.0	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
9.1	98.9	GSM160464	drought control rep1	GSE6990	Barley drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	2e-119	428	Contig3674_at	Contig3674	-	-	1e-14	At2g37640	EXP3	C.G.	S.X.	Please select
0.29	8e-42	171	Contig7055_at	Contig7055	-	-	1e-5	At1g69530	ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)	C.G.	S.X.	Please select
0.28	8e-36	151	Contig3676_at	Contig3676	-	-	9e-6	At2g37640	EXP3	C.G.	S.X.	Please select
0.23	2e-17	89	Contig16079_at	Contig16079	-	-	1e-4	At2g37640	EXP3	C.G.	S.X.	Please select
0.08	5e-6	52	Contig18422_at	Contig18422	-	-	1e-1	At5g42900	unknown protein	C.G.	S.X.	Please select
0.05	5e-3	42	Contig11609_at	Contig11609	-	-	7e-1	At1g56320	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	36	Contig1237_s_at	Contig1237	aquaporin	-	1e-30	At1g01620	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)	C.G.	S.X.	Please select
0.02	3e-1	36	Contig14883_at	Contig14883	-	-	2e+0	At5g07840	ankyrin repeat family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig11653_s_at	Contig11653	-	-	8e+0	At4g40011	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	2e-10	67	Arabidopsis thaliana	At3g55500	824715	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.20	2e-7	57	Glycine max	GmaAffx.93176.1.S1_s_at	CF808901	expansin	-	2e-24	At2g28950	ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6)	C.G.	S.X.	Please select
0.56	3e-171	603	Oryza sativa	Os01g0823100	U30477.1	-	Alpha-expansin OsEXPA2	5e-5	At1g69530	ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	2e-8	61	Populus trichocarpa	PtpAffx.206351.1.S1_at	pmrna12606	hypothetical protein	-	2e-12	At1g26770	ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.82	0	1235	Triticum aestivum	Ta.5567.1.S1_at	AY543529.1	expansin EXPA3	-	3e-18	At2g37640	EXP3	C.G.	S.X.	Please select
0.16	2e-26	119	Vitis vinifera	1619010_s_at	BQ794765	similar to expansin	-	4e-11	At2g40610	ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8)	C.G.	S.X.	Please select
0.52	7e-153	539	Zea mays	Zm.665.1.S1_at	AF332169.1	alpha expansin1	-	7e-13	At2g37640	EXP3	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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