CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig3659_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.78 91.2 Contig3659_at Contig3659 - - 3e-7 At4g29060 emb2726 (embryo defective 2726) S.X. H.G.
0.91 98.1 Contig24657_at Contig24657 - - 2e-2 At5g18940 Mo25 family protein S.X. H.G.
0.86 94.8 Contig2990_at Contig2990 - - 1e-4 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) S.X. H.G.
0.82 93.1 rbaal22l07_s_at rbaal22l07 vacuolar ATPase B subunit - 1e-1 At3g44100 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein S.X. H.G.
0.78 91.2 HVSMEg0011K10r2_x_at HVSMEg0011K10r2 - - 3e+0 At2g30695 - S.X. H.G.
0.67 84.7 HD13H12r_s_at HD13H12r - - 2e-1 At3g28710 H+-transporting two-sector ATPase, putative S.X. H.G.
0.67 84.7 rbah59f07_s_at rbah59f07 - - 4e+0 At3g24160 PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN) S.X. H.G.
0.64 80.9 Contig682_s_at Contig682 - - 9e-13 At3g10410 scpl49 (serine carboxypeptidase-like 49) S.X. H.G.
0.63 80.3 Contig30_s_at Contig30 - - 4e-19 At5g59690 histone H4 S.X. H.G.
0.61 78.7 Contig3558_s_at Contig3558 - - 2e-15 At1g24510 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.1 99.4 GSM261062 Xantha s-46 Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.2 99.2 GSM261068 Albina f-17 Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.2 99.1 GSM261031 Dicktoo-control-rep2 GSE10329 Low temperature stress in cv. Dicktoo
9.8 99.1 GSM161200 cold treatment rep1 GSE6993 Barley low temperature stress
8.5 98.8 GSM161221 cold treatment rep3 GSE6993 Barley low temperature stress
8.3 98.8 GSM261069 Albina f-17 Control rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.3 98.8 GSM160744 drought control rep2 GSE6990 Barley drought stress
7.7 98.6 GSM261032 Dicktoo control-rep3 GSE10329 Low temperature stress in cv. Dicktoo
7.7 98.6 GSM160815 drought control rep3 GSE6990 Barley drought stress
7.6 98.6 GSM261034 Dicktoo-chilling-rep2 GSE10329 Low temperature stress in cv. Dicktoo
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1245 Contig3659_s_at Contig3659 - - 3e-7 At4g29060 emb2726 (embryo defective 2726) C.G. S.X.
0.03 6e-4 44 Contig14403_at Contig14403 - - 8e+0 At5g59150 ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D) C.G. S.X.
0.03 4e-2 38 Contig12382_at Contig12382 - - 2e+1 At5g60910 AGL8 (agamous-like 8) C.G. S.X.
0.02 1e-1 36 Contig16852_at Contig16852 - - 2e-3 At3g47670 enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor C.G. S.X.
0.02 6e-1 34 Contig11142_at Contig11142 - - 7e-4 At1g08370 DCP1 (decapping 1) C.G. S.X.
0.02 6e-1 34 Contig16878_at Contig16878 - - 6e-7 At2g37050 kinase C.G. S.X.
0.02 6e-1 34 Contig10536_at Contig10536 - - 3e-2 At2g18250 ATCOAD (4-phosphopantetheine adenylyltransferase) C.G. S.X.
0.02 2e+0 32 Contig959_x_at Contig959 - - 5e+0 At3g59840 unknown protein C.G. S.X.
0.02 2e+0 32 bags33d23_at bags33d23 - - 1e+0 At3g01250 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 3e-7 56 Arabidopsis thaliana At4g29060 829027 emb2726 (embryo defective 2726) F:RNA binding, translation elongation factor activity;P:embryonic development ending in seed dormancy, translational elongation, response to cadmium ion;C:chloroplast stroma, chloroplast, chloroplast envelope;BOMFPAV - - - C.G. S.X.
0.15 2e-6 54 Glycine max Gma.1666.1.S1_at BG508327 - - 8e-37 At4g29060 emb2726 (embryo defective 2726) C.G. S.X.
0.19 1e-122 440 Oryza sativa Os12g0541500 AK067367.1 - Elongation factor Ts (EF-Ts) 1e-10 At4g29060 emb2726 (embryo defective 2726) C.G. S.X.
0.07 4e-1 36 Populus trichocarpa PtpAffx.128497.1.S1_at CV277499 hypothetical protein - 4e-64 At4g29060 emb2726 (embryo defective 2726) C.G. S.X.
0.59 0 819 Triticum aestivum Ta.454.1.S1_at BQ171739 - - 7e-10 At4g29060 emb2726 (embryo defective 2726) C.G. S.X.
0.27 3e-23 107 Vitis vinifera 1610546_at CB976033 similar to Os12g0541500 - 1e-35 At4g29060 emb2726 (embryo defective 2726) C.G. S.X.
0.09 3e-36 151 Zea mays Zm.16207.1.A1_at AW355980 Phosphoglucomutase 1 - 6e-43 At1g23190 phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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