Gene omics information

Query gene ID	Contig3633_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	75.8	Contig3633_s_at	Contig3633	-	-	7e-1	At3g13480	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig125_at	Contig125	-	-	2e+0	At4g25720	QC (GLUTAMINYL CYCLASE)	S.X.	H.G.	Please select
0.61	78.7	Contig14753_at	Contig14753	-	-	4e-7	At5g38060	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig15156_at	Contig15156	-	-	2e+0	At1g48210	serine/threonine protein kinase, putative	S.X.	H.G.	Please select
0.43	56.4	Contig16867_at	Contig16867	-	-	7e-9	At3g02690	integral membrane family protein	S.X.	H.G.	Please select
0.40	53.1	Contig5226_at	Contig5226	-	-	1e-1	At1g79790	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.9	99.4	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.6	98.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.8	97.8	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.6	97.7	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.5	97.6	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.5	96.7	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8	95.7	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.4	94.8	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.3	94.6	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.63	1e-115	414	Contig3632_s_at	Contig3632	-	-	3e-17	At3g59990	MAP2B (METHIONINE AMINOPEPTIDASE 2B)	C.G.	S.X.	Please select
0.06	3e-11	67	Contig7474_s_at	Contig7474	-	-	6e+0	At5g40650	SDH2-2	C.G.	S.X.	Please select
0.06	3e-11	67	Contig7474_at	Contig7474	-	-	6e+0	At5g40650	SDH2-2	C.G.	S.X.	Please select
0.06	1e-10	65	Contig4860_at	Contig4860	-	-	1e-25	At5g54855	pollen Ole e 1 allergen and extensin family protein	C.G.	S.X.	Please select
0.12	1e-10	65	rbaal12h01_at	rbaal12h01	-	-	4e+0	At3g58290	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select
0.06	1e-10	65	Contig19752_at	Contig19752	-	-	1e+0	At2g01340	unknown protein	C.G.	S.X.	Please select
0.09	1e-10	65	Contig18255_at	Contig18255	-	-	1e+1	At2g43255	unknown protein	C.G.	S.X.	Please select
0.07	1e-10	65	Contig8030_at	Contig8030	-	-	5e+0	At5g45573	unknown protein	C.G.	S.X.	Please select
0.07	1e-10	65	Contig5776_s_at	Contig5776	-	-	3e-1	At1g24735	O-methyltransferase	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	7e-1	34	Arabidopsis thaliana	At3g13480	820550	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	1e-9	63	Glycine max	GmaAffx.83175.1.S1_at	BQ611010	-	-	2e+0	At5g50740	metal ion binding	C.G.	S.X.	Please select
0.06	2e-2	40	Oryza sativa	OsAffx.30317.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	7e-8	57	Populus trichocarpa	PtpAffx.134289.1.A1_at	CV240617	-	-	2e+0	At5g14360	ubiquitin family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.51	4e-55	214	Triticum aestivum	Ta.2490.2.S1_a_at	BJ312410	-	-	1e-19	At3g59990	MAP2B (METHIONINE AMINOPEPTIDASE 2B)	C.G.	S.X.	Please select
0.05	4e-6	50	Vitis vinifera	1617182_at	CB921793	-	-	5e-3	At1g62240	unknown protein	C.G.	S.X.	Please select
0.07	1e-6	52	Zea mays	Zm.4989.1.A1_at	AI932047	hypothetical protein LOC100191629	-	1e-43	At3g59990	MAP2B (METHIONINE AMINOPEPTIDASE 2B)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage