Gene omics information

Query gene ID	Contig3632_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	72.0	Contig3632_s_at	Contig3632	-	-	3e-17	At3g59990	MAP2B (METHIONINE AMINOPEPTIDASE 2B)	S.X.	H.G.	Please select
0.40	53.1	Contig2360_at	Contig2360	-	-	2e-27	At1g31800	CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3)	S.X.	H.G.	Please select
0.37	47.9	EBpi03_SQ003_I06_at	EBpi03_SQ003_I06	-	-	8e-1	At5g16090	-	S.X.	H.G.	Please select
0.35	45.1	Contig7755_s_at	Contig7755	-	-	2e-1	At5g17165	unknown protein	S.X.	H.G.	Please select
0.31	38.6	Contig12167_at	Contig12167	-	-	2e+0	At3g26660	LBD24 (LOB DOMAIN-CONTAINING PROTEIN 24)	S.X.	H.G.	Please select
0.27	32.1	Contig4973_s_at	Contig4973	-	-	6e+0	At5g22950	VPS24.1	S.X.	H.G.	Please select
0.11	9.4	Contig14621_at	Contig14621	-	-	7e-1	At4g21610	LOL2 (LSD ONE LIKE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.3	99.0	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.4	98.5	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.7	96.9	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.5	96.7	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.5	96.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.8	95.7	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.63	2e-115	414	Contig3633_s_at	Contig3633	-	-	7e-1	At3g13480	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Contig9036_at	Contig9036	-	-	3e+0	At5g48500	unknown protein	C.G.	S.X.	Please select
0.04	3e+0	32	HVSMEf0003B06r2_at	HVSMEf0003B06r2	-	-	1e+0	At1g08080	ACA7 (ALPHA CARBONIC ANHYDRASE 7)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig17686_at	Contig17686	-	-	4e-1	At4g32800	AP2 domain-containing transcription factor TINY, putative	C.G.	S.X.	Please select
0.01	3e+0	32	Contig5357_at	Contig5357	-	-	9e-1	At2g23440	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig5026_at	Contig5026	-	-	3e-4	At1g51400	photosystem II 5 kD protein	C.G.	S.X.	Please select
0.01	3e+0	32	Contig4748_at	Contig4748	-	-	2e-2	At1g76400	ribophorin I family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig13823_at	Contig13823	-	-	2e-4	At5g13170	SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29)	C.G.	S.X.	Please select
0.03	3e+0	32	Contig23325_at	Contig23325	-	-	1e+0	At3g17570	F-box family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	3e-17	89	Arabidopsis thaliana	At3g59990	825169	MAP2B (METHIONINE AMINOPEPTIDASE 2B)	Encodes a MAP2 like methionine aminopeptidase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	8e-9	61	Glycine max	Gma.4154.1.S1_a_at	BE823844	-	-	1e-169	At3g59990	MAP2B (METHIONINE AMINOPEPTIDASE 2B)	C.G.	S.X.	Please select
0.22	6e-72	272	Oryza sativa	Os12g0628500	AK122063.1	-	Methionine aminopeptidase-like protein	2e-29	At3g59990	MAP2B (METHIONINE AMINOPEPTIDASE 2B)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e-1	36	Populus trichocarpa	PtpAffx.159530.1.A1_at	CV269761	-	-	4e+0	At4g27310	zinc finger (B-box type) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.73	1e-136	486	Triticum aestivum	Ta.2490.2.S1_a_at	BJ312410	-	-	1e-19	At3g59990	MAP2B (METHIONINE AMINOPEPTIDASE 2B)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1621823_at	CF214240	hypothetical protein LOC100253216	-	4e+0	At5g66000	unknown protein	C.G.	S.X.	Please select
0.25	2e-71	268	Zea mays	Zm.4989.1.A1_at	AI932047	hypothetical protein LOC100191629	-	1e-43	At3g59990	MAP2B (METHIONINE AMINOPEPTIDASE 2B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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