Gene omics information

Query gene ID	Contig3603_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.0	Contig3603_at	Contig3603	-	-	2e-15	At3g25400	-	S.X.	H.G.	Please select
0.91	98.1	Contig17523_at	Contig17523	-	-	7e-2	At4g08230	glycine-rich protein	S.X.	H.G.	Please select
0.91	98.1	Contig4591_at	Contig4591	-	-	4e-2	At4g22890	PGR5-LIKE A	S.X.	H.G.	Please select
0.91	98.1	Contig17513_at	Contig17513	-	-	4e-4	At5g06600	UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12)	S.X.	H.G.	Please select
0.77	90.8	HZ49P22r_s_at	HZ49P22r	-	-	9e-1	At5g42825	unknown protein	S.X.	H.G.	Please select
0.71	87.1	Contig9703_at	Contig9703	-	-	3e+0	At2g37200	integral membrane protein, putative	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.9	99.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
16.7	99.6	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
13.9	99.5	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.3	99.1	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.2	99.1	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.5	99.0	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.9	98.9	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
8.9	98.9	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
8.2	98.7	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	4e-18	91	Contig3605_at	Contig3605	-	-	3e+0	At3g55570	unknown protein	C.G.	S.X.	Please select
0.05	2e-14	79	HT02G11r_at	HT02G11r	-	-	2e+1	At5g10780	-	C.G.	S.X.	Please select
0.06	2e-14	79	HVSMEk0020A14r2_at	HVSMEk0020A14r2	-	-	3e+0	At4g34050	caffeoyl-CoA 3-O-methyltransferase, putative	C.G.	S.X.	Please select
0.03	2e-1	36	Contig17965_at	Contig17965	-	-	2e-17	At3g15352	ATCOX17	C.G.	S.X.	Please select
0.02	9e-1	34	Contig2859_x_at	Contig2859	-	-	3e-11	At1g08380	PSAO (photosystem I subunit O)	C.G.	S.X.	Please select
0.02	9e-1	34	Contig2859_s_at	Contig2859	-	-	3e-11	At1g08380	PSAO (photosystem I subunit O)	C.G.	S.X.	Please select
0.01	9e-1	34	Contig4729_at	Contig4729	-	-	2e-30	At1g15500	ATNTT2	C.G.	S.X.	Please select
0.02	9e-1	34	Contig2859_at	Contig2859	-	-	3e-11	At1g08380	PSAO (photosystem I subunit O)	C.G.	S.X.	Please select
0.02	9e-1	34	Contig1432_at	Contig1432	-	-	4e+0	At1g80340	GA3OX2 (GIBBERELLIN 3-OXIDASE 2)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	2e-15	83	Arabidopsis thaliana	At3g25400	822124	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPAF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	1e-20	101	Glycine max	GmaAffx.82550.1.S1_at	BM091647	-	-	3e-19	At3g25400	-	C.G.	S.X.	Please select
0.30	2e-63	244	Oryza sativa	Os02g0479300	AB110198.1	-	Pyrophosphohydrolase MazG RS21-C6 family protein	2e-2	At3g25400	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	3e-9	63	Populus trichocarpa	PtpAffx.208202.1.S1_at	pmrna16319	hypothetical protein	-	9e-21	At3g25400	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.66	4e-168	591	Triticum aestivum	TaAffx.89098.1.S1_at	CA605930	-	-	3e-14	At3g25400	-	C.G.	S.X.	Please select
0.14	4e-14	77	Vitis vinifera	1620898_at	CB976503	hypothetical protein LOC100266931	-	2e-2	At3g25400	-	C.G.	S.X.	Please select
0.24	5e-39	161	Zea mays	Zm.18112.1.A1_at	CF627231	mazG nucleotide pyrophosphohydrolase domain protein	-	3e-1	At4g36890	IRX14 (irregular xylem 14)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage