Gene omics information

Query gene ID	Contig3592_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.1	Contig3592_at	Contig3592	-	-	4e-83	At4g39800	MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)	S.X.	H.G.	Please select
0.60	77.3	HV_CEb0011B04r2_s_at	HV_CEb0011B04r2	-	-	9e+0	At5g43540	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.50	66.9	HVSMEf0006D12r2_s_at	HVSMEf0006D12r2	-	-	9e-1	At3g25160	ER lumen protein retaining receptor family protein	S.X.	H.G.	Please select
0.43	56.4	Contig13278_at	Contig13278	-	-	8e-6	At5g07920	DGK1 (DIACYLGLYCEROL KINASE1)	S.X.	H.G.	Please select
0.42	55.2	Contig1922_at	Contig1922	-	-	2e-62	At1g72370	P40	S.X.	H.G.	Please select
0.40	53.1	Contig160_s_at	Contig160	-	-	2e-20	At5g59690	histone H4	S.X.	H.G.	Please select
0.32	40.3	Contig5252_at	Contig5252	-	-	2e-1	At1g78710	unknown protein	S.X.	H.G.	Please select
0.31	38.6	Contig10000_s_at	Contig10000	-	-	8e+0	At5g05113	unknown protein	S.X.	H.G.	Please select
0.31	38.6	Contig5571_at	Contig5571	-	-	6e-8	At2g47590	PHR2 (photolyase/blue-light receptor 2)	S.X.	H.G.	Please select
0.27	32.1	Contig10001_at	Contig10001	-	-	9e-6	At3g01410	RNase H domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.8	99.6	GSM372962	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
13.3	99.4	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
13.3	99.4	GSM372963	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.6	99.3	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.6	99.2	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
10.3	99.1	GSM398261	HS41-1_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
8.9	98.9	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.5	98.8	GSM398273	Moroc9-75_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.7	98.6	GSM372964	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.4	98.5	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	1e-94	347	Contig3591_s_at	Contig3591	-	-	3e+0	At3g53235	unknown protein	C.G.	S.X.	Please select
0.01	3e-2	40	Contig2133_x_at	Contig2133	-	-	4e-2	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	C.G.	S.X.	Please select
0.01	3e-2	40	Contig10280_at	Contig10280	-	-	7e-22	At5g20510	AL5 (ALFIN-LIKE 5)	C.G.	S.X.	Please select
0.01	3e-2	40	Contig2133_s_at	Contig2133	-	-	4e-2	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	C.G.	S.X.	Please select
0.03	3e-2	40	HT01A16w_at	HT01A16w	-	-	5e+0	At5g66250	kinectin-related	C.G.	S.X.	Please select
0.01	3e-2	40	Contig2134_at	Contig2134	-	-	7e-4	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	C.G.	S.X.	Please select
0.01	5e-1	36	Contig9727_at	Contig9727	-	-	5e-1	At5g25030	ATP binding / nucleotide binding / phenylalanine-tRNA ligase	C.G.	S.X.	Please select
0.01	5e-1	36	Contig14791_at	Contig14791	-	-	2e-1	At5g23270	STP11 (SUGAR TRANSPORTER 11)	C.G.	S.X.	Please select
0.01	5e-1	36	EBro02_SQ005_L20_at	EBro02_SQ005_L20	-	-	2e-1	At4g28770	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.51	4e-83	309	Arabidopsis thaliana	At4g39800	830139	MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)	** Referred to as MIPS2 in Mitsuhashi et al 2008. myo-inositol-1-phosphate synthase isoform 1.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.49	2e-79	297	Glycine max	Gma.15564.2.S1_x_at	CD395825	-	-	2e-113	At5g10170	MIPS3 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3)	C.G.	S.X.	Please select
0.69	0	1873	Oryza sativa	Os03g0192700	AB012107.1	-	Myo-inositol-1-phosphate synthase	9e-100	At4g39800	MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.54	2e-82	307	Populus trichocarpa	Ptp.858.1.S1_at	CV256345	hypothetical protein	-	4e-138	At2g22240	MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.81	0	2528	Triticum aestivum	Ta.28254.1.S1_s_at	BJ274136	-	-	3e-115	At4g39800	MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)	C.G.	S.X.	Please select
0.54	0	688	Vitis vinifera	1613429_s_at	CB974870	hypothetical protein LOC100259515	-	0	At2g22240	MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2)	C.G.	S.X.	Please select
0.60	0	920	Zea mays	Zm.2986.1.A1_at	AF056326.1	low phytic acid1	-	4e-105	At4g39800	MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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