Gene omics information

Query gene ID	Contig3576_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig3576_at	Contig3576	-	-	1e-8	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	S.X.	H.G.	Please select
0.56	74.3	Contig4674_at	Contig4674	-	-	5e-2	At1g51680	4CL1 (4-COUMARATE:COA LIGASE 1)	S.X.	H.G.	Please select
0.46	61.0	Contig18939_at	Contig18939	-	-	3e-2	At4g35700	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.40	53.1	rbaal33b21_s_at	rbaal33b21	-	-	7e+0	At5g24155	squalene monooxygenase, putative / squalene epoxidase, putative	S.X.	H.G.	Please select
0.36	47.1	Contig5523_at	Contig5523	-	-	4e-8	At5g10480	PAS2 (PASTICCINO 2)	S.X.	H.G.	Please select
0.22	24.2	Contig18407_at	Contig18407	-	-	2e+0	At3g50450	HR1 (HOMOLOG OF RPW8 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
88.4	100.0	GSM311256	hsp5_without_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
75.2	100.0	GSM311257	hsp5_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
67.2	100.0	GSM311255	hsp5_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
57.1	100.0	GSM311253	hsp5_with_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
41.4	99.9	GSM311254	hsp5_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
39.5	99.9	GSM311258	hsp5_without_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.6	97.7	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.5	96.7	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
3.7	95.5	GSM282024	Malting_day4_Merit_rep2	GSE11200	Expression data from malting barley seeds
3.7	95.5	GSM282023	Malting_day4_Merit_rep3	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	0	803	Contig3578_at	Contig3578	-	-	6e+0	At1g15757	-	C.G.	S.X.	Please select
0.43	2e-165	581	Contig3574_s_at	Contig3574	-	-	4e+0	At1g15757	-	C.G.	S.X.	Please select
0.48	2e-91	335	Contig4174_at	Contig4174	-	-	6e-1	At4g01700	chitinase, putative	C.G.	S.X.	Please select
0.45	9e-85	313	Contig16814_at	Contig16814	-	-	6e-5	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.51	6e-46	184	Contig7001_at	Contig7001	-	-	2e-1	At1g02360	chitinase, putative	C.G.	S.X.	Please select
0.39	1e-43	176	Contig2519_x_at	Contig2519	-	-	9e-9	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.39	1e-43	176	Contig2517_s_at	Contig2517	-	-	2e-6	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.29	3e-35	149	Contig25195_at	Contig25195	-	-	5e+0	At5g16170	unknown protein	C.G.	S.X.	Please select
0.19	1e-34	147	HV_CEa0009O11f2_x_at	HV_CEa0009O11f2	-	-	2e+0	At1g15757	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	1e-8	61	Arabidopsis thaliana	At3g12500	820429	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	2e-5	52	Glycine max	GmaAffx.29692.2.S1_at	AI437572	-	-	8e-1	At1g24260	SEP3 (SEPALLATA3)	C.G.	S.X.	Please select
0.51	5e-71	270	Oryza sativa	Os05g0399400	L37289.1	-	Chitinase (EC 3.2.1.14)	4e-2	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e-2	42	Populus trichocarpa	PtpAffx.77318.2.S1_at	CX658035	hypothetical protein	-	5e-4	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.73	0	1302	Triticum aestivum	Ta.2783.1.S1_at	AB029935.1	chitinase 2	-	2e-4	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.04	3e+0	32	Vitis vinifera	1620505_at	Z54234.1	chitinase class I	-	2e-3	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.29	9e-20	97	Zea mays	Zm.11654.1.A1_at	CK347373	hypothetical protein LOC100280135	-	1e-5	At3g54420	ATEP3	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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