Gene omics information

Query gene ID	Contig3558_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.0	Contig3558_s_at	Contig3558	-	-	2e-15	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	S.X.	H.G.	Please select
0.83	94.0	Contig4143_at	Contig4143	-	-	5e-1	At3g06778	heat shock protein binding / unfolded protein binding	S.X.	H.G.	Please select
0.80	92.5	Contig21617_at	Contig21617	-	-	3e-1	At4g31470	pathogenesis-related protein, putative	S.X.	H.G.	Please select
0.80	92.5	Contig4072_at	Contig4072	-	-	2e+0	At2g31610	40S ribosomal protein S3 (RPS3A)	S.X.	H.G.	Please select
0.67	84.7	Contig30_s_at	Contig30	-	-	4e-19	At5g59690	histone H4	S.X.	H.G.	Please select
0.55	72.0	HD13H12r_s_at	HD13H12r	-	-	2e-1	At3g28710	H+-transporting two-sector ATPase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.3	98.1	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.1	98.0	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.0	97.9	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.8	97.8	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.6	97.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.6	97.7	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.4	97.5	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.3	97.4	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
5.1	97.3	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.50	0	1394	Contig3559_at	Contig3559	-	-	1e-86	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	C.G.	S.X.	Please select
0.02	7e-1	34	Contig1287_at	Contig1287	-	-	1e-4	At1g20580	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	C.G.	S.X.	Please select
0.01	3e+0	32	Contig13085_at	Contig13085	-	-	8e-10	At1g73920	lipase family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Contig3181_at	Contig3181	-	-	4e-16	At5g67030	ABA1 (ABA DEFICIENT 1)	C.G.	S.X.	Please select
0.03	3e+0	32	EBan01_SQ004_G02_at	EBan01_SQ004_G02	-	-	2e+0	At5g58782	dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative	C.G.	S.X.	Please select
0.02	3e+0	32	Contig9319_at	Contig9319	-	-	3e-3	At3g66654	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig8606_at	Contig8606	-	-	3e+0	At5g48545	histidine triad family protein / HIT family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Contig6475_at	Contig6475	-	-	3e-10	At3g01650	RGLG1 (RING domain Ligase1)	C.G.	S.X.	Please select
0.01	3e+0	32	Contig4975_at	Contig4975	-	-	1e-47	At5g65750	2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	2e-15	83	Arabidopsis thaliana	At1g24510	839066	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	F:unfolded protein binding, protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:plasma membrane;BOMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	2e-9	63	Glycine max	GmaAffx.90058.1.S1_s_at	CF805783	-	-	1e-9	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	C.G.	S.X.	Please select
0.26	5e-122	438	Oryza sativa	Os06g0562600	AK067114.1	-	T-complex protein 1, epsilon subunit(TCP-1-epsilon) (CCT-epsilon) (TCP-K36)	2e-88	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.34	2e-31	137	Populus trichocarpa	PtpAffx.8742.1.A1_at	DN491903	hypothetical protein	-	4e-60	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.42	0	791	Triticum aestivum	Ta.19112.1.S1_at	CD885768	-	-	5e-86	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	C.G.	S.X.	Please select
0.27	1e-19	95	Vitis vinifera	1610195_at	CF516829	hypothetical protein LOC100255682	-	2e-21	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	C.G.	S.X.	Please select
0.25	2e-90	331	Zea mays	Zm.5476.3.A1_at	AI676920	hypothetical protein LOC100272988	-	3e-75	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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