Gene omics information

Query gene ID	Contig3527_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	89.5	Contig3527_at	Contig3527	-	-	4e-169	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	S.X.	H.G.	Please select
0.57	74.9	Contig3707_s_at	Contig3707	-	-	1e-23	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	S.X.	H.G.	Please select
0.44	58.9	Contig2761_at	Contig2761	-	-	2e+0	At5g40550	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig5782_at	Contig5782	-	-	9e-3	At5g63740	zinc finger protein-related	S.X.	H.G.	Please select
0.40	53.1	Contig4899_s_at	Contig4899	-	-	2e-2	At2g01140	fructose-bisphosphate aldolase, putative	S.X.	H.G.	Please select
0.40	53.1	Contig6931_at	Contig6931	-	-	8e-1	At2g04480	unknown protein	S.X.	H.G.	Please select
0.23	26.1	Contig16318_at	Contig16318	-	-	7e-2	At3g56790	RNA splicing factor-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.4	99.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
19.0	99.7	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
11.8	99.3	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.8	97.0	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.5	96.7	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.4	96.6	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.4	96.6	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.6	95.3	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.69	0	1174	Contig3528_at	Contig3528	-	-	5e-119	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	C.G.	S.X.	Please select
0.03	2e-3	44	Contig3020_at	Contig3020	-	-	5e-107	At2g20140	26S protease regulatory complex subunit 4, putative	C.G.	S.X.	Please select
0.02	2e-2	40	Contig1657_at	Contig1657	-	-	3e-136	At1g53750	RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)	C.G.	S.X.	Please select
0.01	4e-1	36	Contig191_s_at	Contig191	-	-	7e-6	At2g33740	CUTA	C.G.	S.X.	Please select
0.01	4e-1	36	Contig191_at	Contig191	-	-	7e-6	At2g33740	CUTA	C.G.	S.X.	Please select
0.01	2e+0	34	Contig15377_at	Contig15377	-	-	6e-19	At2g34140	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.02	2e+0	34	Contig25984_at	Contig25984	-	-	9e-1	At4g24380	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig9451_at	Contig9451	-	-	8e-2	At2g27350	OTU-like cysteine protease family protein	C.G.	S.X.	Please select
0.02	2e+0	34	HVSMEn0004B15r2_at	HVSMEn0004B15r2	-	-	1e+1	At5g14570	ATNRT2.7 (Arabidopsis thaliana high affinity nitrate transporter 2.7)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	4e-169	595	Arabidopsis thaliana	At5g19990	832121	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	26S proteasome AAA-ATPase subunit	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.52	9e-134	478	Glycine max	Gma.11232.1.S1_s_at	BI943460	-	-	0	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	C.G.	S.X.	Please select
0.68	0	1546	Oryza sativa	Os02g0205300	AB033537.1	-	26S proteasome subunit 8 (Tat binding protein)	5e-169	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.49	2e-82	307	Populus trichocarpa	Ptp.6509.1.S1_at	CF236682	hypothetical protein	-	1e-171	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.85	0	2417	Triticum aestivum	Ta.28732.1.S1_a_at	CA634142	-	-	6e-144	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	C.G.	S.X.	Please select
0.51	2e-146	517	Vitis vinifera	1614631_at	CB979660	hypothetical protein LOC100254376	-	1e-137	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	C.G.	S.X.	Please select
0.68	0	1421	Zea mays	Zm.5322.1.A1_a_at	AY103724.1	hypothetical protein LOC100273032 /// hypothetical protein LOC100274445	-	9e-152	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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