Gene omics information

Query gene ID Contig3408_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6077.3Contig3408_atContig3408--1e-26At3g27430PBB1S.X.H.G.
0.9498.9Contig14871_atContig14871--2e+0At5g41614unknown proteinS.X.H.G.
0.8092.5Contig23438_atContig23438--2e+0At1g5786060S ribosomal protein L21S.X.H.G.
0.7589.5Contig19788_atContig19788--3e-1At4g26840SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1)S.X.H.G.
0.7187.1Contig23027_atContig23027--1e-1At3g26790FUS3 (FUSCA 3)S.X.H.G.
0.6784.7Contig18195_atContig18195--7e+0At3g56500serine-rich protein-relatedS.X.H.G.
0.6784.7Contig3923_atContig3923--4e-1At3g04460PEX12S.X.H.G.
0.6480.9Contig5455_s_atContig5455--4e+0At2g11005glycine-rich proteinS.X.H.G.
0.5066.9Contig18503_atContig18503--1e-1At4g01995unknown proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
9.499.0GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.399.0GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.698.6GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.097.2GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
4.796.9GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
4.196.2GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
3.695.3GSM382232Root_Hg1GSE15295Mercury toxicity in barley roots
3.695.3GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
3.394.6GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
3.294.3GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.013e-136Contig10510_atContig10510--9e-20At1g13900calcineurin-like phosphoesterase family proteinC.G.S.X.
0.011e+034Contig7936_atContig7936--1e-14At4g38320HHP5 (heptahelical protein 5)C.G.S.X.
0.021e+034Contig22210_atContig22210--1e+0At5g45550mob1/phocein family proteinC.G.S.X.
0.014e+032Contig11455_atContig11455--1e-2At3g18165MOS4 (Modifier of snc1,4)C.G.S.X.
0.014e+032Contig16356_atContig16356--2e+0At5g19200short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.014e+032Contig5521_s_atContig5521--6e-2At5g62810PEX14C.G.S.X.
0.024e+032Contig4188_atContig4188--5e-23At4g31300PBA1C.G.S.X.
0.014e+032Contig10787_atContig10787--5e-5At4g27880seven in absentia (SINA) family proteinC.G.S.X.
0.024e+032Contig23355_atContig23355--5e+0At4g16380metal ion bindingC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.291e-26121Arabidopsis thalianaAt3g27430822364PBB1Encodes 20S proteasome beta subunit PBB1 (PBB1).---C.G.S.X.
0.302e-32141Glycine maxGma.5581.1.S1_atCD392224--8e-53At3g27430PBB1C.G.S.X.
0.620848Oryza sativaOs05g0187000AB026564.1-20S proteasome beta2 subunit1e-23At5g40580PBB2C.G.S.X.
0.343e-34147Populus trichocarpaPtp.4448.1.S1_s_atBU875199hypothetical protein-1e-75At3g27430PBB1C.G.S.X.
0.7701580Triticum aestivumTa.14021.1.S1_atBJ221816--6e-26At3g27430PBB1C.G.S.X.
0.272e-29129Vitis vinifera1622077_s_atCF372353hypothetical protein LOC100249199-3e-21At3g27430PBB1C.G.S.X.
0.519e-180628Zea maysZm.6982.1.S1_atAY105052.1proteasome subunit beta type 7-A-1e-20At3g27430PBB1C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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