Gene omics information

Query gene ID	Contig3403_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig3403_s_at	Contig3403	-	-	2e-2	At5g03850	40S ribosomal protein S28 (RPS28B)	S.X.	H.G.	Please select
0.69	85.5	Contig14012_at	Contig14012	-	-	7e-1	At4g23920	UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2)	S.X.	H.G.	Please select
0.58	74.9	Contig16073_at	Contig16073	-	-	3e-2	At5g37200	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.57	74.9	Contig3229_s_at	Contig3229	-	-	7e+0	At5g54410	unknown protein	S.X.	H.G.	Please select
0.52	68.3	Contig2846_at	Contig2846	-	-	3e-5	At2g27285	unknown protein	S.X.	H.G.	Please select
0.48	63.2	Contig6152_at	Contig6152	-	-	7e-2	At3g59140	ATMRP14	S.X.	H.G.	Please select
0.47	62.2	Contig3967_at	Contig3967	-	-	6e-16	At5g47040	LON2 (LON PROTEASE 2)	S.X.	H.G.	Please select
0.40	53.1	HVSMEb0001F21r2_x_at	HVSMEb0001F21r2	-	-	4e+0	At5g48170	SLY2 (SLEEPY2)	S.X.	H.G.	Please select
0.36	47.1	Contig272_s_at	Contig272	-	-	5e-1	At3g45230	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.36	47.1	Contig326_x_at	Contig326	-	-	0	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.9	98.7	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.8	98.6	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.8	98.3	GSM146370	Golden Promise shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.5	98.2	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.1	98.0	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.8	97.8	GSM130800	control, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
5.7	97.7	GSM146378	Maythorpe shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.6	97.7	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.5	97.6	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.3	97.4	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.41	2e-77	287	Contig3405_x_at	Contig3405	-	-	1e+0	At3g24535	unknown protein	C.G.	S.X.	Please select
0.11	2e-9	61	Contig21455_at	Contig21455	-	-	1e-11	At3g10090	40S ribosomal protein S28 (RPS28A)	C.G.	S.X.	Please select
0.03	9e-3	40	Contig16341_s_at	Contig16341	-	-	8e+0	At5g13860	ELC-Like (ELCH-like)	C.G.	S.X.	Please select
0.03	9e-3	40	Contig3231_at	Contig3231	-	-	1e-23	At4g23900	nucleoside diphosphate kinase 4 (NDK4)	C.G.	S.X.	Please select
0.02	1e-1	36	Contig10518_at	Contig10518	-	-	2e-5	At1g16870	mitochondrial 28S ribosomal protein S29-related	C.G.	S.X.	Please select
0.01	1e-1	36	Contig668_at	Contig668	-	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.02	1e-1	36	Contig4978_at	Contig4978	-	-	3e-3	At2g41740	VLN2 (VILLIN 2)	C.G.	S.X.	Please select
0.03	5e-1	34	Contig9733_s_at	Contig9733	-	-	4e-1	At5g27860	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	Contig18263_at	Contig18263	-	-	3e-3	At3g06200	guanylate kinase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	2e-2	40	Arabidopsis thaliana	At5g03850	831692	40S ribosomal protein S28 (RPS28B)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, ribosome, cell wall, plasma membrane;MOAPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.27	5e-22	105	Glycine max	GmaAffx.60550.2.S1_at	CA783622	-	-	1e-12	At3g10090	40S ribosomal protein S28 (RPS28A)	C.G.	S.X.	Please select
0.30	6e-78	291	Oryza sativa	Os10g0411700	AK058209.1	-	Ribosomal protein S28	5e-3	At3g10090	40S ribosomal protein S28 (RPS28A)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	2e-18	93	Populus trichocarpa	Ptp.4340.1.S1_at	CX167767	hypothetical protein	-	3e-20	At3g10090	40S ribosomal protein S28 (RPS28A)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.70	2e-113	408	Triticum aestivum	Ta.24729.1.S1_x_at	BQ608222	-	-	5e-3	At3g10090	40S ribosomal protein S28 (RPS28A)	C.G.	S.X.	Please select
0.30	8e-33	139	Vitis vinifera	1610667_s_at	CD799449	hypothetical protein LOC100241860	-	4e-9	At5g03850	40S ribosomal protein S28 (RPS28B)	C.G.	S.X.	Please select
0.32	7e-68	256	Zea mays	Zm.16049.2.A1_x_at	CF042888	-	-	3e-4	At5g03850	40S ribosomal protein S28 (RPS28B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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