Gene omics information

Query gene ID	Contig3373_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.0	Contig3373_s_at	Contig3373	-	-	5e-5	At2g18700	ATTPS11	S.X.	H.G.	Please select
0.91	98.1	Contig9859_at	Contig9859	-	-	6e+0	At5g66930	unknown protein	S.X.	H.G.	Please select
0.80	92.5	Contig3372_s_at	Contig3372	-	-	6e-2	At1g62710	BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)	S.X.	H.G.	Please select
0.73	88.7	Contig11663_at	Contig11663	-	-	3e-2	At3g08580	AAC1 (ADP/ATP CARRIER 1)	S.X.	H.G.	Please select
0.57	74.9	Contig3375_at	Contig3375	-	-	1e-12	At1g68020	ATTPS6	S.X.	H.G.	Please select
0.47	62.2	HB22H13r_s_at	HB22H13r	-	-	2e-1	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.8	99.6	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
15.3	99.6	GSM363465	5 mM B(OH)3 treatment (5B) - rep3	GSE14521	Late response to boron toxicity in barley leaves
13.8	99.5	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.3	99.4	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.8	99.3	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.1	99.2	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.7	99.2	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.2	99.1	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.5	99.0	GSM261075	Albina e-16 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.7	98.9	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	2e-18	93	Contig3376_at	Contig3376	-	-	2e-1	At1g68020	ATTPS6	C.G.	S.X.	Please select
0.11	2e-11	69	Contig3375_at	Contig3375	-	-	1e-12	At1g68020	ATTPS6	C.G.	S.X.	Please select
0.04	2e-5	50	HVSMEk0022L04r2_s_at	HVSMEk0022L04r2	-	-	9e-1	At2g28800	ALB3 (ALBINO 3)	C.G.	S.X.	Please select
0.04	2e-5	50	HVSMEk0022L04r2_at	HVSMEk0022L04r2	-	-	9e-1	At2g28800	ALB3 (ALBINO 3)	C.G.	S.X.	Please select
0.04	1e-3	44	Contig4512_s_at	Contig4512	-	-	2e-2	At2g22080	unknown protein	C.G.	S.X.	Please select
0.02	1e-3	44	Contig24654_at	Contig24654	-	-	1e-1	At1g28460	AGL59 (AGAMOUS-LIKE 59)	C.G.	S.X.	Please select
0.05	1e-3	44	Contig11099_at	Contig11099	-	-	3e-10	At2g18700	ATTPS11	C.G.	S.X.	Please select
0.01	1e-3	44	Contig4657_at	Contig4657	-	-	3e-5	At1g23870	ATTPS9	C.G.	S.X.	Please select
0.04	1e-3	44	Contig4512_at	Contig4512	-	-	2e-2	At2g22080	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	5e-5	50	Arabidopsis thaliana	At2g18700	816385	ATTPS11	Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	7e-8	59	Glycine max	Gma.8147.2.S1_at	BU547713	-	-	4e-13	At1g70290	ATTPS8	C.G.	S.X.	Please select
0.40	5e-142	506	Oryza sativa	Os02g0790500	AK066691.1	-	Glycosyl transferase, family 20 domain containingprotein	3e-11	At1g68020	ATTPS6	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	3e-4	48	Populus trichocarpa	PtpAffx.79915.1.S1_s_at	CV233367	hypothetical protein	-	3e-6	At1g23870	ATTPS9	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.60	0	1667	Triticum aestivum	Ta.14558.1.S1_at	BT009244.1	-	-	2e-5	At4g17770	ATTPS5	C.G.	S.X.	Please select
0.03	3e-6	52	Vitis vinifera	1618133_at	CF404967	hypothetical protein LOC100259114	-	2e-1	At5g28610	-	C.G.	S.X.	Please select
0.41	2e-135	482	Zea mays	Zm.15516.1.S1_at	CK787189	hypothetical protein LOC100279678	-	2e+0	At1g60140	ATTPS10 (trehalose phosphate synthase)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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