Gene omics information

Query gene ID	Contig3365_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.43	56.4	Contig3365_at	Contig3365	-	-	2e-85	At1g09100	RPT5B (26S proteasome AAA-ATPase subunit RPT5B)	S.X.	H.G.	Please select
0.77	90.8	Contig8940_s_at	Contig8940	-	-	2e-3	At3g02000	ROXY1	S.X.	H.G.	Please select
0.57	74.9	Contig6572_at	Contig6572	-	-	8e-1	At5g07100	WRKY26	S.X.	H.G.	Please select
0.44	58.9	Contig7447_at	Contig7447	-	-	2e-7	At4g10790	UBX domain-containing protein	S.X.	H.G.	Please select
0.42	55.2	Contig18600_at	Contig18600	-	-	8e-5	At1g72520	lipoxygenase, putative	S.X.	H.G.	Please select
0.23	26.1	Contig11781_at	Contig11781	-	-	5e-3	At5g03460	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.8	97.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.3	97.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0	96.0	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.6	95.3	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	3e-45	182	HVSMEm0001F11r2_x_at	HVSMEm0001F11r2	-	-	4e+0	At2g31200	ADF6 (ACTIN DEPOLYMERIZING FACTOR 6)	C.G.	S.X.	Please select
0.12	3e-45	182	HVSMEm0001F11r2_at	HVSMEm0001F11r2	-	-	4e+0	At2g31200	ADF6 (ACTIN DEPOLYMERIZING FACTOR 6)	C.G.	S.X.	Please select
0.04	7e-6	52	Contig3020_at	Contig3020	-	-	5e-107	At2g20140	26S protease regulatory complex subunit 4, putative	C.G.	S.X.	Please select
0.03	7e-6	52	Contig3021_at	Contig3021	-	-	1e-85	At2g20140	26S protease regulatory complex subunit 4, putative	C.G.	S.X.	Please select
0.02	2e-3	44	Contig1724_s_at	Contig1724	-	-	1e-7	At5g66400	RAB18 (RESPONSIVE TO ABA 18)	C.G.	S.X.	Please select
0.03	7e-3	42	Contig4561_at	Contig4561	-	-	2e-69	At5g58290	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)	C.G.	S.X.	Please select
0.02	3e-2	40	Contig1725_s_at	Contig1725	-	-	8e-5	At1g20440	COR47 (COLD-REGULATED 47)	C.G.	S.X.	Please select
0.01	3e-2	40	Contig1657_at	Contig1657	-	-	3e-136	At1g53750	RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)	C.G.	S.X.	Please select
0.01	1e-1	38	Contig4109_at	Contig4109	-	-	3e-66	At2g29080	ftsh3 (FtsH protease 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.57	2e-85	317	Arabidopsis thaliana	At1g09100	837431	RPT5B (26S proteasome AAA-ATPase subunit RPT5B)	Encodes RPT5b (Regulatory Particle 5b), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.49	5e-117	422	Glycine max	Gma.2136.3.S1_at	BE057237	-	-	4e-156	At3g05530	RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A)	C.G.	S.X.	Please select
0.69	0	1293	Oryza sativa	Os02g0803700	AK103936.1	-	26S protease regulatory subunit 6A homolog(TAT-binding protein homolog 1) (TBP-1)	7e-72	At3g05530	RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.55	2e-156	553	Populus trichocarpa	PtpAffx.3914.2.S1_at	BP935372	hypothetical protein	-	7e-177	At1g09100	RPT5B (26S proteasome AAA-ATPase subunit RPT5B)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.76	0	2254	Triticum aestivum	Ta.22845.1.S1_at	BJ215922	tat binding protein	-	7e-54	At1g09100	RPT5B (26S proteasome AAA-ATPase subunit RPT5B)	C.G.	S.X.	Please select
0.57	2e-147	521	Vitis vinifera	1620253_at	CB977519	hypothetical protein LOC100259757	-	0	At3g05530	RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A)	C.G.	S.X.	Please select
0.61	0	1078	Zea mays	Zm.6155.1.A1_a_at	T20358	hypothetical protein LOC100273594	-	3e-111	At3g05530	RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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