Gene omics information

Query gene ID	Contig3346_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.1	Contig3346_at	Contig3346	-	-	6e-2	At2g29850	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig7195_at	Contig7195	-	-	5e-1	At5g41210	ATGSTT1 (GLUTATHIONE S-TRANSFERASE THETA 1)	S.X.	H.G.	Please select
0.29	35.5	HVSMEb0008P10r2_at	HVSMEb0008P10r2	-	-	8e-2	At1g49610	F-box family protein	S.X.	H.G.	Please select
0.25	28.9	EBpi03_SQ001_I14_at	EBpi03_SQ001_I14	-	-	1e+1	At5g03880	electron carrier	S.X.	H.G.	Please select
0.09	7.4	Contig3574_s_at	Contig3574	-	-	4e+0	At1g15757	-	S.X.	H.G.	Please select
0.08	6.5	Contig6493_at	Contig6493	-	-	6e-2	At4g31080	unknown protein	S.X.	H.G.	Please select
0.07	5.8	Contig7692_s_at	Contig7692	-	-	8e-8	At4g16765	oxidoreductase, 2OG-Fe(II) oxygenase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
56.7	100.0	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
47.7	99.9	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
43.5	99.9	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
43.4	99.9	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
42.5	99.9	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
41.1	99.9	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
30.8	99.9	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
14.9	99.5	GSM238421	Endosperm 0 h; Seed germination Rep 2	GSE9365	Expression data from barley maturing and germinating grains
12.9	99.4	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
12.9	99.4	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	5e-1	36	Contig16322_at	Contig16322	-	-	5e+0	At5g57500	transferase, transferring glycosyl groups	C.G.	S.X.	Please select
0.01	5e-1	36	Contig8428_at	Contig8428	-	-	4e-40	At3g07160	ATGSL10 (glucan synthase-like 10)	C.G.	S.X.	Please select
0.01	5e-1	36	Contig3738_at	Contig3738	-	-	3e-20	At1g50200	ALATS (ALANYL-TRNA SYNTHETASE)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig5012_s_at	Contig5012	-	-	4e-22	At5g64300	ATGCH	C.G.	S.X.	Please select
0.02	2e+0	34	rbaal4b13_at	rbaal4b13	-	-	1e+0	At1g11362	enzyme inhibitor/ pectinesterase	C.G.	S.X.	Please select
0.01	2e+0	34	Contig13082_at	Contig13082	-	-	2e-2	At4g20325	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig1783_x_at	Contig1783	-	-	1e-4	At2g27130	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig1783_at	Contig1783	-	-	1e-4	At2g27130	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.01	7e+0	32	Contig701_x_at	Contig701	-	-	1e-31	At1g09200	histone H3	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	6e-2	40	Arabidopsis thaliana	At2g29850	817535	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	36	Glycine max	HgAffx.11385.1.S1_at	CB935065	-	-	1e+0	At4g19070	cadmium-responsive protein / cadmium induced protein (AS8)	C.G.	S.X.	Please select
0.16	1e-10	69	Oryza sativa	Os02g0248800	AY429651.1	-	Glutelin type-B 2 precursor	8e-1	At5g35540	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.01	5e+0	34	Populus trichocarpa	PtpAffx.223324.1.S1_s_at	pmrna41260	hypothetical protein	-	4e-1	At2g28570	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.80	0	1071	Triticum aestivum	Ta.28312.1.S1_at	BJ241990	triticin	-	7e-2	At3g19360	zinc finger (CCCH-type) family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Vitis vinifera	1620338_at	CB834181	-	-	6e+0	Atmg00500	-	C.G.	S.X.	Please select
0.02	7e+0	32	Zea mays	Zm.9953.1.S1_at	BM349903	-	-	4e+0	At5g55507	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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