Gene omics information

Query gene ID	Contig3338_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.40	53.1	Contig3338_s_at	Contig3338	-	-	8e-4	At3g23080	-	S.X.	H.G.	Please select
0.67	84.7	Contig13515_at	Contig13515	-	-	8e-7	At5g51795	Kin17 DNA-binding protein-related	S.X.	H.G.	Please select
0.60	77.3	rbaal30a15_s_at	rbaal30a15	-	-	7e+0	At4g16008	unknown protein	S.X.	H.G.	Please select
0.60	77.3	rbags5f04_s_at	rbags5f04	-	-	2e+0	At3g61678	unknown protein	S.X.	H.G.	Please select
0.57	74.9	Contig3337_s_at	Contig3337	-	-	5e-50	At5g59840	Ras-related GTP-binding family protein	S.X.	H.G.	Please select
0.38	49.5	Contig10496_at	Contig10496	-	-	1e-17	At1g18070	EF-1-alpha-related GTP-binding protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.9	99.5	GSM261063	Xantha s-46 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.9	99.4	GSM261057	Xantha b-12 Cotrol rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.0	99.3	GSM261058	Xantha b-12 Cotrol rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.8	99.3	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.0	99.1	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.8	99.1	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.1	98.7	GSM261056	Xantha b-12 Cotrol rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.9	98.7	GSM363464	5 mM B(OH)3 treatment (5B) - rep2	GSE14521	Late response to boron toxicity in barley leaves
7.8	98.6	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.7	98.6	GSM261062	Xantha s-46 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.79	0	1873	Contig3339_at	Contig3339	-	-	9e-6	At1g64720	CP5	C.G.	S.X.	Please select
0.32	3e-125	448	rbaal8a22_at	rbaal8a22	-	-	2e+0	At1g75690	chaperone protein dnaJ-related	C.G.	S.X.	Please select
0.10	2e-67	256	Contig3340_at	Contig3340	-	-	4e-14	At3g06050	PRXIIF (PEROXIREDOXIN IIF)	C.G.	S.X.	Please select
0.10	2e-8	59	Contig2139_at	Contig2139	-	-	4e-6	At1g64720	CP5	C.G.	S.X.	Please select
0.01	4e-1	36	Contig9003_at	Contig9003	-	-	6e-1	At2g20180	PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5)	C.G.	S.X.	Please select
0.02	4e-1	36	Contig6438_s_at	Contig6438	-	-	6e-1	At2g44581	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.01	4e-1	36	Contig16719_at	Contig16719	-	-	5e-1	At5g13825	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig6141_s_at	Contig6141	-	-	6e-1	At3g54560	HTA11	C.G.	S.X.	Please select
0.02	4e-1	36	HW03D17u_at	HW03D17u	-	-	4e+0	At5g65300	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	8e-4	46	Arabidopsis thaliana	At3g23080	821882	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e-1	38	Glycine max	HgAffx.13807.1.S1_at	CB374126	-	-	6e-2	At1g21065	unknown protein	C.G.	S.X.	Please select
0.41	1e-145	517	Oryza sativa	Os04g0119500	AK063189.1	-	Membrane related protein-like	2e-2	At1g64720	CP5	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	3e-4	48	Populus trichocarpa	Ptp.852.1.S1_at	CV266701	hypothetical protein	-	2e-29	At1g64720	CP5	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.69	0	1721	Triticum aestivum	Ta.6034.1.S1_at	CD454680	-	-	2e-5	At1g64720	CP5	C.G.	S.X.	Please select
0.11	4e-9	61	Vitis vinifera	1617345_s_at	CF514945	hypothetical protein LOC100247984	-	3e-21	At1g64720	CP5	C.G.	S.X.	Please select
0.06	2e-8	59	Zea mays	Zm.5245.1.A1_at	CF003837	-	-	7e+0	At5g66607	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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