Gene omics information

Query gene ID	Contig3337_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig3337_s_at	Contig3337	-	-	5e-50	At5g59840	Ras-related GTP-binding family protein	S.X.	H.G.	Please select
0.91	98.1	HF01J12w_s_at	HF01J12w	-	-	4e-1	At2g32310	-	S.X.	H.G.	Please select
0.83	94.0	Contig5153_at	Contig5153	chloroplast inner envelope protein-like	-	3e+0	At5g46860	VAM3	S.X.	H.G.	Please select
0.80	92.5	Contig2776_at	Contig2776	-	-	5e-20	At3g22890	APS1 (ATP SULFURYLASE 1)	S.X.	H.G.	Please select
0.47	62.2	rbags5f04_s_at	rbags5f04	-	-	2e+0	At3g61678	unknown protein	S.X.	H.G.	Please select
0.35	45.1	Contig8498_at	Contig8498	-	-	6e-8	At4g36390	radical SAM domain-containing protein / TRAM domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.3	98.5	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.8	98.3	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.3	98.1	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.6	97.7	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.5	97.6	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.4	97.5	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.8	97.0	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.7	96.9	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.3	96.4	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
4.3	96.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1752	Contig3337_at	Contig3337	-	-	5e-50	At5g59840	Ras-related GTP-binding family protein	C.G.	S.X.	Please select
0.66	0	1072	HI01O12w_at	HI01O12w	-	-	3e-29	At5g59840	Ras-related GTP-binding family protein	C.G.	S.X.	Please select
0.51	1e-178	624	Contig3334_at	Contig3334	-	-	2e-53	At3g53610	ATRAB8	C.G.	S.X.	Please select
0.51	6e-116	416	Contig3335_at	Contig3335	-	-	3e-67	At5g59840	Ras-related GTP-binding family protein	C.G.	S.X.	Please select
0.04	6e-8	57	Contig2537_at	Contig2537	-	-	1e-29	At3g11730	ATFP8	C.G.	S.X.	Please select
0.06	2e-7	56	Contig3169_at	Contig3169	-	-	2e-13	At1g16920	ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B)	C.G.	S.X.	Please select
0.04	2e-7	56	Contig2393_at	Contig2393	-	-	9e-31	At1g43890	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)	C.G.	S.X.	Please select
0.05	2e-7	56	Contig2377_s_at	Contig2377	-	-	1e-29	At1g43890	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)	C.G.	S.X.	Please select
0.04	4e-6	52	Contig3634_at	Contig3634	-	-	3e-46	At5g47200	ATRAB1A	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.53	5e-50	198	Arabidopsis thaliana	At5g59840	836105	Ras-related GTP-binding family protein	F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.53	6e-66	252	Glycine max	GmaAffx.91170.1.S1_x_at	CF806895	-	-	5e-58	At3g46060	ATRAB8A	C.G.	S.X.	Please select
0.60	3e-62	240	Oryza sativa	Os.12233.2.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.45	7e-90	331	Populus trichocarpa	PtpAffx.14585.3.S1_at	BU893135	hypothetical protein	-	2e-133	At3g46060	ATRAB8A	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.79	0	1310	Triticum aestivum	Ta.6968.1.S1_at	CK196001	-	-	1e-45	At3g53610	ATRAB8	C.G.	S.X.	Please select
0.44	5e-69	260	Vitis vinifera	1620541_at	CF212449	hypothetical protein LOC100257177	-	5e-75	At3g53610	ATRAB8	C.G.	S.X.	Please select
0.44	2e-100	365	Zea mays	Zm.6039.1.A1_at	BG837895	-	-	9e-65	At5g03520	ATRAB8C	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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