Gene omics information

Query gene ID	Contig3335_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig3335_at	Contig3335	-	-	3e-67	At5g59840	Ras-related GTP-binding family protein	S.X.	H.G.	Please select
0.91	98.1	Contig3334_at	Contig3334	-	-	2e-53	At3g53610	ATRAB8	S.X.	H.G.	Please select
0.83	94.0	Contig3332_at	Contig3332	-	-	2e-1	At3g21215	RNA-binding protein, putative	S.X.	H.G.	Please select
0.80	92.5	Contig3337_at	Contig3337	-	-	5e-50	At5g59840	Ras-related GTP-binding family protein	S.X.	H.G.	Please select
0.63	80.3	Contig16423_at	Contig16423	-	-	2e+0	At3g02580	STE1 (STEROL 1)	S.X.	H.G.	Please select
0.36	47.1	HA06i14r_s_at	HA06i14r	-	-	8e-4	At5g15650	RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.6	99.5	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
11.6	99.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.9	98.7	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.3	97.4	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.1	96.2	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9	95.8	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9	95.8	GSM146360	Golden Promise Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.8	95.7	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.8	95.7	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
3.6	95.3	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.51	7e-116	416	Contig3337_s_at	Contig3337	-	-	5e-50	At5g59840	Ras-related GTP-binding family protein	C.G.	S.X.	Please select
0.51	7e-116	416	Contig3337_at	Contig3337	-	-	5e-50	At5g59840	Ras-related GTP-binding family protein	C.G.	S.X.	Please select
0.42	3e-93	341	Contig3334_at	Contig3334	-	-	2e-53	At3g53610	ATRAB8	C.G.	S.X.	Please select
0.36	1e-52	206	HI01O12w_at	HI01O12w	-	-	3e-29	At5g59840	Ras-related GTP-binding family protein	C.G.	S.X.	Please select
0.03	7e-8	57	Contig2537_at	Contig2537	-	-	1e-29	At3g11730	ATFP8	C.G.	S.X.	Please select
0.04	3e-7	56	Contig3169_at	Contig3169	-	-	2e-13	At1g16920	ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B)	C.G.	S.X.	Please select
0.03	1e-6	54	Contig2393_at	Contig2393	-	-	9e-31	At1g43890	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)	C.G.	S.X.	Please select
0.03	1e-6	54	Contig2377_s_at	Contig2377	-	-	1e-29	At1g43890	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)	C.G.	S.X.	Please select
0.04	2e-5	50	Contig2536_at	Contig2536	-	-	5e-1	At2g32360	ubiquitin family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.48	3e-67	256	Arabidopsis thaliana	At5g59840	836105	Ras-related GTP-binding family protein	F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.47	7e-32	139	Glycine max	GmaAffx.91170.1.S1_x_at	CF806895	-	-	5e-58	At3g46060	ATRAB8A	C.G.	S.X.	Please select
0.54	0	726	Oryza sativa	Os03g0819900	AY576526.1	-	Ethylene-responsive small GTP-binding protein	4e-82	At3g09900	ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.41	2e-41	171	Populus trichocarpa	Ptp.2072.2.S1_s_at	CA931719	hypothetical protein	-	6e-83	At3g46060	ATRAB8A	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.42	2e-108	393	Triticum aestivum	Ta.6968.1.S1_at	CK196001	-	-	1e-45	At3g53610	ATRAB8	C.G.	S.X.	Please select
0.41	1e-69	262	Vitis vinifera	1620541_at	CF212449	hypothetical protein LOC100257177	-	5e-75	At3g53610	ATRAB8	C.G.	S.X.	Please select
0.43	4e-148	523	Zea mays	Zm.2593.1.S1_at	CA403212	ras-related protein ARA-3	-	5e-54	At5g59840	Ras-related GTP-binding family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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