Gene omics information

Query gene ID	Contig3334_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig3334_at	Contig3334	-	-	2e-53	At3g53610	ATRAB8	S.X.	H.G.	Please select
0.91	98.1	Contig3335_at	Contig3335	-	-	3e-67	At5g59840	Ras-related GTP-binding family protein	S.X.	H.G.	Please select
0.83	94.0	Contig3332_at	Contig3332	-	-	2e-1	At3g21215	RNA-binding protein, putative	S.X.	H.G.	Please select
0.80	92.5	Contig3337_at	Contig3337	-	-	5e-50	At5g59840	Ras-related GTP-binding family protein	S.X.	H.G.	Please select
0.63	80.3	Contig16423_at	Contig16423	-	-	2e+0	At3g02580	STE1 (STEROL 1)	S.X.	H.G.	Please select
0.36	47.1	HA06i14r_s_at	HA06i14r	-	-	8e-4	At5g15650	RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.9	98.3	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
6.5	98.2	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
4.7	96.9	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
4.6	96.8	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
4.3	96.4	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1	96.2	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.8	95.7	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.7	95.5	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.7	95.5	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.51	2e-178	624	Contig3337_s_at	Contig3337	-	-	5e-50	At5g59840	Ras-related GTP-binding family protein	C.G.	S.X.	Please select
0.51	2e-178	624	Contig3337_at	Contig3337	-	-	5e-50	At5g59840	Ras-related GTP-binding family protein	C.G.	S.X.	Please select
0.37	2e-113	408	HI01O12w_at	HI01O12w	-	-	3e-29	At5g59840	Ras-related GTP-binding family protein	C.G.	S.X.	Please select
0.42	4e-93	341	Contig3335_at	Contig3335	-	-	3e-67	At5g59840	Ras-related GTP-binding family protein	C.G.	S.X.	Please select
0.03	2e-5	50	Contig2537_at	Contig2537	-	-	1e-29	At3g11730	ATFP8	C.G.	S.X.	Please select
0.05	7e-5	48	Contig3169_at	Contig3169	-	-	2e-13	At1g16920	ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B)	C.G.	S.X.	Please select
0.04	7e-5	48	Contig2393_at	Contig2393	-	-	9e-31	At1g43890	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)	C.G.	S.X.	Please select
0.04	7e-5	48	Contig2377_s_at	Contig2377	-	-	1e-29	At1g43890	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)	C.G.	S.X.	Please select
0.03	5e-3	42	Contig2536_at	Contig2536	-	-	5e-1	At2g32360	ubiquitin family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.46	2e-53	210	Arabidopsis thaliana	At3g53610	824529	ATRAB8	GTPase AtRAB8 (atrab8)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.47	2e-81	303	Glycine max	GmaAffx.91170.1.S1_x_at	CF806895	-	-	5e-58	At3g46060	ATRAB8A	C.G.	S.X.	Please select
0.58	0	781	Oryza sativa	Os05g0461300	AK111917.1	-	Ras-related protein Rab-8A (Oncogene c-mel)	4e-48	At3g53610	ATRAB8	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.38	2e-66	254	Populus trichocarpa	PtpAffx.12284.1.A1_s_at	CV236490	hypothetical protein	-	6e-81	At3g46060	ATRAB8A	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.76	0	1562	Triticum aestivum	Ta.23107.1.S1_a_at	CK156982	-	-	1e-51	At3g53610	ATRAB8	C.G.	S.X.	Please select
0.36	4e-64	244	Vitis vinifera	1620541_at	CF212449	hypothetical protein LOC100257177	-	5e-75	At3g53610	ATRAB8	C.G.	S.X.	Please select
0.42	4e-157	553	Zea mays	Zm.2826.1.S1_at	BM333443	hypothetical protein LOC100192989	-	2e-62	At3g46060	ATRAB8A	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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