CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig3326_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.94 98.9 Contig3326_s_at Contig3326 - - 8e+0 At5g01300 phosphatidylethanolamine-binding family protein S.X. H.G.
0.44 58.9 Contig297_s_at Contig297 - - 5e-59 At1g56070 LOS1 S.X. H.G.
0.37 47.9 Contig7506_at Contig7506 - - 2e-39 At3g23310 protein kinase, putative S.X. H.G.
0.34 43.6 HVSMEk0006K21f_at HVSMEk0006K21f - - 1e-3 At4g26870 aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative S.X. H.G.
0.31 38.6 HVSMEa0001A19r2_at HVSMEa0001A19r2 - - 1e+1 At4g24340 phosphorylase family protein S.X. H.G.
0.30 37.0 Contig8240_at Contig8240 - - 5e+0 At4g12825 - S.X. H.G.
0.29 35.5 Contig3940_at Contig3940 - - 1e+0 At5g22100 RNA cyclase family protein S.X. H.G.
0.27 32.1 Contig653_at Contig653 - - 5e-1 At3g29375 XH domain-containing protein S.X. H.G.
0.27 32.1 HVSMEl0020O13r2_s_at HVSMEl0020O13r2 - - 9e+0 At5g17150 - S.X. H.G.
0.26 30.4 Contig14601_at Contig14601 - - 1e+0 At2g12905 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.1 99.7 GSM215730 Control (DMSO) treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
12.4 99.4 GSM215731 gibberellin treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
12.1 99.3 GSM215727 Control (DMSO) treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
8.2 98.7 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
6.2 98.0 GSM261067 Xantha s-46 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.2 98.0 GSM146359 Golden Promise Root Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.1 98.0 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.1 98.0 GSM146367 Maythorpe Root Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.1 98.0 GSM215728 gibberellin treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
5.9 97.9 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.58 8e-128 456 HS08M08u_s_at HS08M08u - - 1e+0 At1g52580 ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5) C.G. S.X.
0.27 8e-57 220 HW03B09u_x_at HW03B09u - - 6e+0 At5g17450 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related C.G. S.X.
0.05 4e-3 42 HW03M24u_at HW03M24u - - 1e+0 At3g06060 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.01 2e-1 36 Contig6775_at Contig6775 - - 5e-3 At4g30120 HMA3 (HEAVY METAL ATPASE 3) C.G. S.X.
0.01 1e+0 34 Contig3441_at Contig3441 - - 7e-14 At2g30490 C4H (CINNAMATE-4-HYDROXYLASE) C.G. S.X.
0.02 1e+0 34 Contig15382_at Contig15382 - - 7e+0 Atmg00550 - C.G. S.X.
0.01 1e+0 34 Contig4942_at Contig4942 - - 7e-14 At5g51070 ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1) C.G. S.X.
0.01 1e+0 34 Contig12820_at Contig12820 - - 2e-1 At4g33580 carbonic anhydrase family protein / carbonate dehydratase family protein C.G. S.X.
0.01 1e+0 34 Contig9716_at Contig9716 - - 3e-6 At5g46800 BOU (A BOUT DE SOUFFLE) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 8e+0 32 Arabidopsis thaliana At5g01300 830983 phosphatidylethanolamine-binding family protein F:phosphatidylethanolamine binding;P:biological_process unknown;C:cellular_component unknown;BOAPF - - - C.G. S.X.
0.04 3e+0 34 Glycine max Gma.69.1.S1_at AF068123 - - 2e+0 At3g26460 major latex protein-related / MLP-related C.G. S.X.
0.19 3e-25 117 Oryza sativa Os06g0116100 CB683800 - Serine/threonine-protein kinase MAK (EC 2.7.1.37)(Male germ cell- associated kinase) 9e-17 At5g45430 protein kinase, putative C.G. S.X.
0.03 3e+0 34 Populus trichocarpa PtpAffx.220950.1.S1_at pmrna37448 hypothetical protein - 2e+0 At3g07940 zinc finger and C2 domain protein, putative C.G. S.X.
0.65 0 773 Triticum aestivum Ta.7252.3.S1_at CA651037 - - 2e+0 At5g24879 unknown protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1615070_at CF373219 hypothetical protein LOC100253300 - 4e-6 At1g53645 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.10 2e-23 109 Zea mays Zm.5696.1.A1_at AW067308 hypothetical protein LOC100274101 - 2e-8 At5g45430 protein kinase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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