Gene omics information

Query gene ID	Contig3295_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	61.0	Contig3295_at	Contig3295	-	-	2e-1	At3g55040	GSTL2	S.X.	H.G.	Please select
0.46	61.0	Contig16344_at	Contig16344	-	-	2e+0	At3g15410	leucine-rich repeat family protein	S.X.	H.G.	Please select
0.40	53.1	HVSMEb0003M21r2_x_at	HVSMEb0003M21r2	-	-	3e-1	At2g18721	unknown protein	S.X.	H.G.	Please select
0.33	42.6	Contig20244_at	Contig20244	-	-	2e-4	At4g37200	HCF164	S.X.	H.G.	Please select
0.33	42.6	Contig9720_at	Contig9720	-	-	2e+0	At3g10150	PAP16 (PURPLE ACID PHOSPHATASE 16)	S.X.	H.G.	Please select
0.16	15.3	Contig12561_at	Contig12561	-	-	1e+0	At5g53720	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
42.7	99.9	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
42.0	99.9	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
40.0	99.9	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
31.1	99.9	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
25.4	99.8	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
17.6	99.6	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
9.9	99.1	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
8.7	98.9	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
6.2	98.0	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
6.0	97.9	GSM71151	Barke stress and unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	3e-174	611	Contig3294_s_at	Contig3294	-	-	5e-4	At5g02780	In2-1 protein, putative	C.G.	S.X.	Please select
0.21	3e-17	89	Contig6546_at	Contig6546	-	-	8e+0	At5g02780	In2-1 protein, putative	C.G.	S.X.	Please select
0.01	2e-2	40	Contig4916_at	Contig4916	-	-	4e-15	At4g13360	catalytic	C.G.	S.X.	Please select
0.01	2e-2	40	Contig3786_at	Contig3786	-	-	2e-18	At3g13460	ECT2	C.G.	S.X.	Please select
0.01	2e-2	40	Contig4454_at	Contig4454	-	-	2e-26	At3g18190	chaperonin, putative	C.G.	S.X.	Please select
0.02	9e-2	38	Contig14437_at	Contig14437	-	-	1e+0	At4g19640	ARA7	C.G.	S.X.	Please select
0.02	3e-1	36	Contig402_s_at	Contig402	-	-	3e-7	At3g09390	MT2A (METALLOTHIONEIN 2A)	C.G.	S.X.	Please select
0.01	3e-1	36	Contig16057_at	Contig16057	-	-	2e+0	At5g01530	chlorophyll A-B binding protein CP29 (LHCB4)	C.G.	S.X.	Please select
0.02	3e-1	36	Contig13989_at	Contig13989	-	-	3e-12	At5g39660	CDF2 (CYCLING DOF FACTOR 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	2e-1	38	Arabidopsis thaliana	At3g55040	824670	GSTL2	F:unknown;P:unknown;C:chloroplast, chloroplast stroma;PBMOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e-2	42	Glycine max	Gma.3153.1.S1_s_at	BE822687	-	-	4e-17	At5g02790	In2-1 protein, putative	C.G.	S.X.	Please select
0.47	5e-176	619	Oryza sativa	Os03g0283100	AK065887.1	-	Glutathione S-transferase, C-terminal domaincontaining protein	4e-5	At3g55040	GSTL2	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	2e-14	81	Populus trichocarpa	PtpAffx.159323.1.A1_at	CV277573	hypothetical protein	-	1e-1	At5g02780	In2-1 protein, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.77	0	1259	Triticum aestivum	Ta.3784.1.S1_a_at	CD453769	-	-	3e-6	At5g02790	In2-1 protein, putative	C.G.	S.X.	Please select
0.06	9e-7	54	Vitis vinifera	1607482_at	CB342115	-	-	7e-16	At5g02790	In2-1 protein, putative	C.G.	S.X.	Please select
0.44	4e-139	494	Zea mays	Zm.8697.2.A1_at	BQ619221	IN2-1 protein	-	3e-6	At5g02790	In2-1 protein, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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