CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig3281_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 Contig3281_s_at Contig3281 - - 2e-45 At5g57655 xylose isomerase family protein S.X. H.G.
0.83 94.0 HV02H21u_at HV02H21u - - 4e+0 At4g27900 - S.X. H.G.
0.50 66.9 Contig22727_at Contig22727 - - 2e+0 At4g38630 RPN10 (REGULATORY PARTICLE NON-ATPASE 10) S.X. H.G.
0.50 66.9 Contig20816_at Contig20816 - - 1e-1 At4g36780 transcription regulator S.X. H.G.
0.43 56.4 HVSMEf0018G20r2_s_at HVSMEf0018G20r2 - - 2e-1 At3g22950 ATARFC1 (ADP-ribosylation factor C1) S.X. H.G.
0.36 47.1 HO06A21S_at HO06A21S - - 1e-2 At2g44000 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.8 98.9 GSM215731 gibberellin treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
8.4 98.8 GSM282030 Malting_day4_Harrington_rep2 GSE11200 Expression data from malting barley seeds
8.1 98.7 GSM282024 Malting_day4_Merit_rep2 GSE11200 Expression data from malting barley seeds
7.8 98.6 GSM71143 OWB-R stress replicate 2 GSE3170 Barley single feature polymorphisms and drought stress gene expression
7.5 98.6 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
7.5 98.6 GSM282022 Malting_day4_Merit_rep4 GSE11200 Expression data from malting barley seeds
7.4 98.5 GSM215728 gibberellin treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
6.3 98.1 GSM282020 Malting_day4_Legacy_rep 3 GSE11200 Expression data from malting barley seeds
6.2 98.0 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
6.0 97.9 GSM282039 Malting_day4_Morex_rep2 GSE11200 Expression data from malting barley seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.93 0 2393 Contig3277_at Contig3277 - - 1e-46 At5g57655 xylose isomerase family protein C.G. S.X.
0.02 1e-1 38 Contig18098_at Contig18098 - - 5e+0 At5g26890 unknown protein C.G. S.X.
0.01 1e-1 38 Contig17203_at Contig17203 - - 9e-3 At4g17350 phosphoinositide binding C.G. S.X.
0.01 4e-1 36 Contig14554_s_at Contig14554 - - 7e+0 At5g06240 emb2735 (embryo defective 2735) C.G. S.X.
0.01 4e-1 36 Contig3057_s_at Contig3057 - - 8e-4 At1g22990 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related C.G. S.X.
0.01 4e-1 36 Contig25734_at Contig25734 - - 2e+0 At4g23340 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.01 4e-1 36 Contig2403_at Contig2403 - - 8e-7 At4g39090 RD19 (RESPONSIVE TO DEHYDRATION 19) C.G. S.X.
0.01 4e-1 36 Contig14554_at Contig14554 - - 7e+0 At5g06240 emb2735 (embryo defective 2735) C.G. S.X.
0.01 4e-1 36 Contig11952_at Contig11952 - - 7e-2 At3g49260 iqd21 (IQ-domain 21) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 2e-45 184 Arabidopsis thaliana At5g57655 835871 xylose isomerase family protein F:xylose isomerase activity;P:carbohydrate metabolic process;C:endoplasmic reticulum, plasma membrane, vacuole;BOPMF - - - C.G. S.X.
0.45 2e-36 155 Glycine max Gma.11180.1.S1_at BG363593 - - 2e-94 At5g57655 xylose isomerase family protein C.G. S.X.
0.65 0 1326 Oryza sativa Os07g0669100 AK072249.1 - Xylose isomerase (EC 5.3.1.5) 3e-62 At5g57655 xylose isomerase family protein C.G. S.X.
0.38 8e-39 163 Populus trichocarpa Ptp.5378.1.S1_s_at CX174648 hypothetical protein - 5e-81 At5g57655 xylose isomerase family protein C.G. S.X.
0.80 0 2389 Triticum aestivum Ta.14437.1.S1_at BJ306848 - - 2e-32 At5g57655 xylose isomerase family protein C.G. S.X.
0.19 3e-25 115 Vitis vinifera 1617004_at CB347444 hypothetical protein LOC100254769 - 1e-32 At5g57655 xylose isomerase family protein C.G. S.X.
0.60 0 1239 Zea mays Zm.8993.1.A1_a_at AI649732 hypothetical protein LOC100194128 /// hypothetical protein LOC100194385 - 2e-27 At5g57655 xylose isomerase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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