Gene omics information

Query gene ID	Contig3276_s_at
Gene name	CesA2 protein
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig3276_s_at	Contig3276	CesA2 protein	-	2e-2	At4g28890	protein binding / ubiquitin-protein ligase/ zinc ion binding	S.X.	H.G.	Please select
0.67	84.7	Contig3277_at	Contig3277	-	-	1e-46	At5g57655	xylose isomerase family protein	S.X.	H.G.	Please select
0.55	72.0	Contig10932_at	Contig10932	-	-	8e-15	At4g27745	-	S.X.	H.G.	Please select
0.50	66.9	Contig5050_s_at	Contig5050	-	-	8e-2	At1g26920	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig6820_at	Contig6820	-	-	7e-12	At4g13350	NIG (NSP (NUCLEAR SHUTTLE PROTEIN)-INTERACTING GTPASE)	S.X.	H.G.	Please select
0.33	42.6	Contig7649_at	Contig7649	-	-	2e+0	At1g52342	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.7	98.9	GSM261027	ABA-Late-rep1	GSE10328	ABA experiment
8.3	98.8	GSM161220	cold treatment rep2	GSE6993	Barley low temperature stress
8.1	98.7	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
7.7	98.6	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
7.7	98.6	GSM160464	drought control rep1	GSE6990	Barley drought stress
6.9	98.3	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.9	98.3	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment
6.8	98.3	GSM160815	drought control rep3	GSE6990	Barley drought stress
6.7	98.3	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
6.6	98.2	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.66	7e-124	442	HVSMEn0005O13f_x_at	HVSMEn0005O13f	-	-	2e-1	At2g17200	ubiquitin family protein	C.G.	S.X.	Please select
0.40	2e-81	301	HVSMEb0007M11r2_s_at	HVSMEb0007M11r2	CesA2 protein	-	2e-1	At2g17200	ubiquitin family protein	C.G.	S.X.	Please select
0.06	9e-3	40	Contig20165_at	Contig20165	-	-	3e-23	At4g32410	CESA1 (CELLULOSE SYNTHASE 1)	C.G.	S.X.	Please select
0.01	4e-2	38	Contig7162_at	Contig7162	-	-	2e-11	At2g41620	nucleoporin interacting component family protein	C.G.	S.X.	Please select
0.02	6e-1	34	Contig13086_s_at	Contig13086	-	-	8e+0	At4g33040	glutaredoxin family protein	C.G.	S.X.	Please select
0.02	6e-1	34	Contig6782_at	Contig6782	-	-	6e-1	At5g41660	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Contig5833_s_at	Contig5833	-	-	3e-4	At2g17370	HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2)	C.G.	S.X.	Please select
0.01	2e+0	32	Contig5833_at	Contig5833	-	-	3e-4	At2g17370	HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig5834_at	Contig5834	-	-	5e-1	At4g24275	-	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-2	40	Arabidopsis thaliana	At4g28890	829010	protein binding / ubiquitin-protein ligase/ zinc ion binding	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-2	40	Glycine max	GmaAffx.20985.1.S1_at	AW309085	-	-	4e-4	At2g45600	hydrolase	C.G.	S.X.	Please select
0.09	7e-16	85	Oryza sativa	Os03g0837100	AK100877.1	-	Cellulose synthase-7	2e-34	At2g21770	CESA9 (CELLULOSE SYNTHASE A9)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e+0	32	Populus trichocarpa	PtpAffx.47362.2.S1_a_at	CV226550	-	-	2e-10	At5g56760	ATSERAT1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.22	4e-90	331	Triticum aestivum	Ta.6466.1.S1_at	BE431148	-	-	1e-29	At5g09870	CESA5 (CELLULOSE SYNTHASE 5)	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1615766_at	CB350178	hypothetical protein LOC100262547	-	1e-6	At1g44414	unknown protein	C.G.	S.X.	Please select
0.07	9e-12	69	Zea mays	Zm.521.1.S1_at	AF200530.1	cellulose synthase6	-	1e-20	At2g21770	CESA9 (CELLULOSE SYNTHASE A9)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage