Gene omics information

Query gene ID	Contig3265_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig3265_s_at	Contig3265	-	-	3e-2	At2g35910	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.87	95.0	Contig5242_at	Contig5242	-	-	3e-1	At2g30560	glycine-rich protein	S.X.	H.G.	Please select
0.83	94.0	Contig5342_at	Contig5342	-	-	4e-3	At3g56150	EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C)	S.X.	H.G.	Please select
0.82	93.1	Contig3963_s_at	Contig3963	-	-	7e-39	At4g19210	ATRLI2	S.X.	H.G.	Please select
0.75	89.5	HA28J12r_s_at	HA28J12r	-	-	1e+0	At3g23255	unknown protein	S.X.	H.G.	Please select
0.72	87.4	Contig3856_at	Contig3856	-	-	1e-19	At1g52600	signal peptidase, putative	S.X.	H.G.	Please select
0.72	87.4	Contig2826_at	Contig2826	-	-	1e-21	At3g44110	ATJ3	S.X.	H.G.	Please select
0.72	87.4	Contig8436_s_at	Contig8436	-	-	7e-2	At5g40950	RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27)	S.X.	H.G.	Please select
0.70	86.0	HV05M01u_x_at	HV05M01u	-	-	8e+0	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	S.X.	H.G.	Please select
0.70	86.0	Contig5574_at	Contig5574	-	-	2e-11	At4g30210	ATR2 (ARABIDOPSIS P450 REDUCTASE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.4	98.1	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.9	97.9	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
5.7	97.7	GSM282034	Malting_steeped_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.6	97.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.2	96.3	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.0	96.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0	96.0	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.9	95.8	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.76	0	716	Contig3265_at	Contig3265	-	-	3e-2	At2g35910	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	5e-2	38	Contig14515_at	Contig14515	-	-	2e+0	At1g43610	NLI interacting factor (NIF) family protein	C.G.	S.X.	Please select
0.01	5e-2	38	Contig5813_at	Contig5813	-	-	3e-13	At3g55990	ESK1 (ESKIMO 1)	C.G.	S.X.	Please select
0.01	2e-1	36	Contig6130_at	Contig6130	-	-	4e+0	At3g15260	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.01	2e-1	36	Contig7635_s_at	Contig7635	-	-	3e-1	At5g42630	ATS (ABERRANT TESTA SHAPE)	C.G.	S.X.	Please select
0.03	2e-1	36	baak20j05_s_at	baak20j05	-	-	8e-2	At2g39855	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig6781_at	Contig6781	-	-	7e+0	At5g20650	COPT5	C.G.	S.X.	Please select
0.03	8e-1	34	HVSMEn0018C16r2_x_at	HVSMEn0018C16r2	-	-	3e+0	At3g43420	unknown protein	C.G.	S.X.	Please select
0.03	8e-1	34	Contig2475_at	Contig2475	-	-	7e-2	At4g11870	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-2	40	Arabidopsis thaliana	At2g35910	818164	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	36	Glycine max	PsAffx.CL1373Contig1_at	PsAffx.CL1373Contig1	-	-	1e+0	At5g01820	ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1)	C.G.	S.X.	Please select
0.21	2e-10	67	Oryza sativa	Os01g0332900	9629.m02213	-	Hypothetical protein	5e-4	At4g11660	AT-HSFB2B	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e-1	36	Populus trichocarpa	PtpAffx.51367.1.S1_s_at	CF234654	hypothetical protein	-	4e-1	At2g43140	DNA binding / transcription factor	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.51	3e-122	438	Triticum aestivum	Ta.23809.1.S1_s_at	CK167661	-	-	2e+0	At5g63740	zinc finger protein-related	C.G.	S.X.	Please select
0.03	5e-1	34	Vitis vinifera	1608066_at	CB342796	hypothetical protein LOC100254977	-	5e-1	At5g43570	serine-type endopeptidase inhibitor	C.G.	S.X.	Please select
0.03	7e-1	34	Zea mays	Zm.9431.1.A1_at	BM337524	-	-	1e+0	At5g37200	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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