Gene omics information

Query gene ID	Contig3263_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig3263_at	Contig3263	-	-	9e-38	At4g20360	ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B)	S.X.	H.G.	Please select
0.67	84.7	Contig326_x_at	Contig326	-	-	0	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	S.X.	H.G.	Please select
0.57	74.9	Contig6203_at	Contig6203	-	-	1e-3	At1g70110	lectin protein kinase family protein	S.X.	H.G.	Please select
0.56	74.3	Contig4296_at	Contig4296	-	-	5e-38	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	S.X.	H.G.	Please select
0.29	35.5	Contig3794_at	Contig3794	-	-	7e-31	At1g16890	ubiquitin-conjugating enzyme, putative	S.X.	H.G.	Please select
0.22	24.2	HVSMEb0001F21r2_x_at	HVSMEb0001F21r2	-	-	4e+0	At5g48170	SLY2 (SLEEPY2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.6	97.7	GSM261031	Dicktoo-control-rep2	GSE10329	Low temperature stress in cv. Dicktoo
4.8	97.0	GSM261056	Xantha b-12 Cotrol rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.3	96.4	GSM160815	drought control rep3	GSE6990	Barley drought stress
4.1	96.2	GSM261057	Xantha b-12 Cotrol rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.0	96.0	GSM261063	Xantha s-46 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9	95.8	GSM261062	Xantha s-46 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9	95.8	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.7	95.5	GSM160744	drought control rep2	GSE6990	Barley drought stress
3.4	94.8	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3	94.6	GSM281747	Genotype: Steptoe - rep3	GSE11182	Steptoe x Morex seedling leaf comparison

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	1e-19	97	Contig3262_at	Contig3262	-	-	1e-61	At4g02930	elongation factor Tu, putative / EF-Tu, putative	C.G.	S.X.	Please select
0.01	1e-1	38	Contig4506_at	Contig4506	-	-	6e+0	At4g02725	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig7633_at	Contig7633	-	-	7e-2	At3g50910	unknown protein	C.G.	S.X.	Please select
0.02	4e-1	36	HX13K24r_at	HX13K24r	-	-	4e+0	At5g43170	AZF3 (ARABIDOPSIS ZINC-FINGER PROTEIN 3)	C.G.	S.X.	Please select
0.01	4e-1	36	Contig8617_s_at	Contig8617	-	-	1e-1	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	C.G.	S.X.	Please select
0.03	2e+0	34	Contig6095_at	Contig6095	-	-	1e+0	At4g25140	OLEO1 (OLEOSIN 1)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig18189_at	Contig18189	-	-	1e+0	At3g51920	CAM9 (CALMODULIN 9)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig6093_s_at	Contig6093	-	-	1e-11	At3g10260	reticulon family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig12302_at	Contig12302	-	-	1e-2	At5g62440	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	9e-38	159	Arabidopsis thaliana	At4g20360	827784	ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B)	F:GTP binding, translation elongation factor activity, GTPase activity;P:peptidyl-cysteine S-nitrosylation;C:in 9 components;BOMFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.38	4e-127	456	Glycine max	Gma.14977.1.S1_at	CD391055	-	-	1e-42	At4g20360	ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B)	C.G.	S.X.	Please select
0.70	0	1519	Oryza sativa	Os02g0595700	AF145053.1	-	Chloroplast elongation factor TuA (EF-TuA)precursor (Fragment)	4e-28	At4g20360	ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	4e-19	97	Populus trichocarpa	PtpAffx.220386.1.S1_at	pmrna36765	hypothetical protein	-	6e-9	At4g20360	ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.80	0	2553	Triticum aestivum	Ta.717.1.S1_at	BJ308303	-	-	3e-28	At4g20360	ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B)	C.G.	S.X.	Please select
0.17	2e-36	153	Vitis vinifera	1608205_at	CA817318	similar to Elongation factor Tu, chloroplastic	-	1e-76	At4g20360	ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B)	C.G.	S.X.	Please select
0.60	0	825	Zea mays	Zm.6033.1.A1_s_at	AY105509.1	elongation factor Tu /// elongation factor Tu	-	4e-14	At4g20360	ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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