Gene omics information

Query gene ID	Contig3217_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	92.5	Contig3217_s_at	Contig3217	-	-	2e-2	At4g08230	glycine-rich protein	S.X.	H.G.	Please select
0.73	88.7	Contig321_at	Contig321	-	-	2e-27	At4g27230	HTA2 (histone H2A)	S.X.	H.G.	Please select
0.55	72.0	Contig19227_at	Contig19227	-	-	1e+0	At5g45010	ATDSS1(V) (Arabidopsis dss1 homolog on chromosome V)	S.X.	H.G.	Please select
0.55	72.0	HA01A13u_at	HA01A13u	-	-	3e+0	At2g42220	rhodanese-like domain-containing protein	S.X.	H.G.	Please select
0.53	69.7	Contig13949_at	Contig13949	-	-	1e+0	At3g45990	actin-depolymerizing factor, putative	S.X.	H.G.	Please select
0.35	45.1	HA26O15r_at	HA26O15r	-	-	1e-2	At3g14225	GLIP4	S.X.	H.G.	Please select
0.32	40.3	Contig3375_at	Contig3375	-	-	1e-12	At1g68020	ATTPS6	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.1	99.7	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
20.3	99.7	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
20.3	99.7	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
18.9	99.7	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
17.3	99.6	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
16.6	99.6	GSM146370	Golden Promise shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
16.0	99.6	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
15.9	99.6	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
15.8	99.6	GSM146372	Golden Promise shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
14.1	99.5	GSM146378	Maythorpe shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.93	0	1065	Contig3214_at	Contig3214	-	-	2e-2	At4g08230	glycine-rich protein	C.G.	S.X.	Please select
0.36	9e-71	266	Contig3216_at	Contig3216	-	-	1e+0	At1g65410	ATNAP11 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 11)	C.G.	S.X.	Please select
0.39	2e-68	258	Contig3215_s_at	Contig3215	-	-	4e+0	At5g57640	-	C.G.	S.X.	Please select
0.37	1e-60	232	HV05F11u_x_at	HV05F11u	-	-	2e+1	At5g53420	-	C.G.	S.X.	Please select
0.32	6e-44	176	Contig6933_s_at	Contig6933	-	-	3e-1	At3g56340	40S ribosomal protein S26 (RPS26C)	C.G.	S.X.	Please select
0.20	2e-16	85	Contig3735_at	Contig3735	-	-	2e-1	At2g02100	LCR69 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 69)	C.G.	S.X.	Please select
0.23	4e-14	77	Contig3736_s_at	Contig3736	-	-	2e-1	At2g02100	LCR69 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 69)	C.G.	S.X.	Please select
0.13	3e-9	61	Contig17315_at	Contig17315	-	-	1e+0	At5g19875	unknown protein	C.G.	S.X.	Please select
0.03	9e-3	40	Contig11245_at	Contig11245	-	-	1e-1	At1g34780	ATAPRL4 (APR-like 4)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-2	40	Arabidopsis thaliana	At4g08230	826373	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-4	46	Glycine max	GmaAffx.55767.1.S1_at	BQ079515	-	-	1e-2	At1g05990	calcium-binding protein, putative	C.G.	S.X.	Please select
0.33	9e-37	155	Oryza sativa	Os02g0629800	AK121915.1	-	Cp-thionin	1e-3	At2g02100	LCR69 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 69)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	7e-3	42	Populus trichocarpa	PtpAffx.202434.1.S1_at	pmrna4878	hypothetical protein	-	1e-2	At5g24500	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.53	1e-96	353	Triticum aestivum	Ta.30928.1.S1_at	CN010804	-	-	1e+0	At5g37780	CAM1 (CALMODULIN 1)	C.G.	S.X.	Please select
0.03	9e-2	36	Vitis vinifera	1614762_at	CF414632	-	-	1e-2	At5g65207	unknown protein	C.G.	S.X.	Please select
0.23	2e-25	115	Zea mays	Zm.7295.1.S1_at	CO526541	hypothetical protein LOC100276937 /// low-molecular-weight cysteine-rich protein LCR69	-	2e-2	At2g02100	LCR69 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 69)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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