Gene omics information

Query gene ID	Contig3198_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig3198_at	Contig3198	-	-	6e+0	At5g25940	early nodulin-related	S.X.	H.G.	Please select
0.71	87.1	Contig3147_at	Contig3147	-	-	3e-4	At1g09940	HEMA2	S.X.	H.G.	Please select
0.67	84.7	Contig2160_at	Contig2160	-	-	2e-34	At4g38920	ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)	S.X.	H.G.	Please select
0.63	80.3	Contig26171_at	Contig26171	-	-	2e+0	At1g52580	ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)	S.X.	H.G.	Please select
0.60	77.3	Contig21607_at	Contig21607	-	-	2e+1	At5g50710	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig10718_at	Contig10718	-	-	2e-7	At1g78440	ATGA2OX1 (gibberellin 2-oxidase 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.3	99.9	GSM398281	Moroc9-75_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
24.5	99.8	GSM398282	Moroc9-75_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
18.2	99.7	GSM398280	Moroc9-75_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
17.5	99.6	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
15.5	99.6	GSM398272	HS41-1_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
15.2	99.5	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
13.9	99.5	GSM398279	Moroc9-75_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
13.4	99.4	GSM398277	Moroc9-75_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
13.3	99.4	GSM398273	Moroc9-75_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
12.2	99.4	GSM398276	Moroc9-75_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	1548	Contig3198_x_at	Contig3198	-	-	6e+0	At5g25940	early nodulin-related	C.G.	S.X.	Please select
0.98	0	1548	Contig3198_s_at	Contig3198	-	-	6e+0	At5g25940	early nodulin-related	C.G.	S.X.	Please select
0.49	2e-131	468	HVSMEn0004G12r2_x_at	HVSMEn0004G12r2	-	-	4e+1	At5g52880	F-box family protein	C.G.	S.X.	Please select
0.24	2e-32	139	Contig3199_at	Contig3199	-	-	7e+0	At4g17850	-	C.G.	S.X.	Please select
0.03	5e-2	38	Contig12608_at	Contig12608	-	-	1e-3	At5g22490	condensation domain-containing protein	C.G.	S.X.	Please select
0.02	5e-2	38	Contig12609_at	Contig12609	-	-	4e-1	At1g29160	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.01	5e-2	38	Contig668_at	Contig668	-	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.03	5e-2	38	Contig12608_s_at	Contig12608	-	-	1e-3	At5g22490	condensation domain-containing protein	C.G.	S.X.	Please select
0.01	2e-1	36	Contig3125_at	Contig3125	-	-	2e-15	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e+0	32	Arabidopsis thaliana	At5g25940	832663	early nodulin-related	F:molecular_function unknown;P:unknown;C:mitochondrion;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-1	38	Glycine max	PsAffx.CL1640Contig1_at	PsAffx.CL1640Contig1	-	-	3e+0	At4g27350	unknown protein	C.G.	S.X.	Please select
0.10	8e-4	46	Oryza sativa	Os.6389.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.218800.1.S1_at	pmrna34537	hypothetical protein	-	2e+1	Atmg01060	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.63	4e-103	375	Triticum aestivum	Ta.1966.1.S1_x_at	CD882800	-	-	7e+0	At2g27340	-	C.G.	S.X.	Please select
0.04	2e+0	32	Vitis vinifera	1612611_s_at	CF519096	-	-	5e-1	At1g14880	unknown protein	C.G.	S.X.	Please select
0.20	8e-10	63	Zea mays	Zm.10833.1.S1_at	AY109775.1	-	-	5e+0	At5g64140	RPS28 (RIBOSOMAL PROTEIN S28)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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