CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig3187_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 78.7 Contig3187_s_at Contig3187 - - 1e+0 At1g31410 putrescine-binding periplasmic protein-related S.X. H.G.
0.47 62.2 Contig2347_at Contig2347 - - 3e-4 At3g18070 BGLU43 (BETA GLUCOSIDASE 43) S.X. H.G.
0.42 55.2 Contig17684_at Contig17684 - - 1e-1 At4g16610 zinc finger (C2H2 type) family protein S.X. H.G.
0.37 47.9 Contig11990_at Contig11990 - - 2e+0 At5g63400 ADK1 (ADENYLATE KINASE 1) S.X. H.G.
0.34 43.6 HK04G05r_at HK04G05r - - 7e-1 At2g40935 unknown protein S.X. H.G.
0.33 42.6 rbags12k11_s_at rbags12k11 - - 1e-6 At3g25540 LAG1 S.X. H.G.
0.32 40.3 Contig3757_at Contig3757 - - 1e-30 At3g12860 nucleolar protein Nop56, putative S.X. H.G.
0.32 40.3 Contig20300_at Contig20300 - - 6e+0 At4g17486 unknown protein S.X. H.G.
0.29 35.5 Contig7528_s_at Contig7528 - - 1e-2 At4g32400 SHS1 (SODIUM HYPERSENSITIVE 1) S.X. H.G.
0.28 35.5 Contig16430_at Contig16430 - - 2e-4 At1g62240 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.0 99.8 GSM431548 pathogen isolates: Mock - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
19.8 99.7 GSM431549 pathogen isolates: Polymyxa graminis - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
19.0 99.7 GSM431547 pathogen isolates: Mock - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
17.0 99.6 GSM382233 Root_Hg2 GSE15295 Mercury toxicity in barley roots
16.4 99.6 GSM431551 pathogen isolates: Polymyxa graminis - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
15.6 99.6 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
15.3 99.6 GSM71157 Steptoe stress and unstress replicate 1 GSE3170 Barley single feature polymorphisms and drought stress gene expression
15.2 99.5 GSM146363 Maythorpe Root Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
14.6 99.5 GSM238438 Embryo 72 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
14.4 99.5 GSM431550 pathogen isolates: Polymyxa graminis - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.89 0 839 Contig3185_s_at Contig3185 - - 1e+0 At3g24820 BSD domain-containing protein C.G. S.X.
0.90 0 819 Contig3186_at Contig3186 - - 5e+0 At5g48657 defense protein-related C.G. S.X.
0.63 1e-91 335 Contig7315_at Contig7315 - - 1e+0 At1g54060 ASIL1 (ARABIDOPSIS 6B-INTERACTING PROTEIN 1-LIKE 1) C.G. S.X.
0.02 7e-7 54 Contig10043_at Contig10043 - - 8e-38 At5g13280 AK-LYS1 (ASPARTATE KINASE 1) C.G. S.X.
0.01 3e-6 52 Contig7560_at Contig7560 - - 5e-53 At2g39930 ISA1 (ISOAMYLASE 1) C.G. S.X.
0.04 3e-6 52 Contig23563_at Contig23563 - - 2e+0 At2g23930 SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) C.G. S.X.
0.03 1e-5 50 Contig9052_at Contig9052 - - 1e-4 At1g08470 strictosidine synthase family protein C.G. S.X.
0.04 2e-4 46 HU14P01u_at HU14P01u - - 1e+0 At2g23430 ICK1 C.G. S.X.
0.03 6e-4 44 Contig11980_at Contig11980 - - 3e-2 At3g57920 SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 34 Arabidopsis thaliana At1g31410 840031 putrescine-binding periplasmic protein-related F:transporter activity;P:transport;C:chloroplast;BOPA - - - C.G. S.X.
0.04 7e-3 42 Glycine max GmaAffx.12286.2.S1_at BM108265 - - 1e-11 At5g38510 rhomboid family protein C.G. S.X.
0.04 3e-3 44 Oryza sativa Os11g0479000 AK107976.1 - Hypothetical protein 4e-1 At5g19875 unknown protein C.G. S.X.
0.04 2e+0 34 Populus trichocarpa PtpAffx.217185.1.S1_at pmrna32342 hypothetical protein - 3e+0 At5g61890 AP2 domain-containing transcription factor family protein C.G. S.X.
0.75 1e-53 210 Triticum aestivum TaAffx.131916.2.S1_at CA732003 - - 4e+0 At5g13330 Rap2.6L (related to AP2 6L) C.G. S.X.
0.05 1e-4 46 Vitis vinifera 1614133_at CD711415 hypothetical protein LOC100255873 - 5e-2 At1g43800 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative C.G. S.X.
0.04 6e-4 44 Zea mays Zm.6913.2.A1_a_at AI065646 - - 9e-1 At2g16060 AHB1 (ARABIDOPSIS HEMOGLOBIN 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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