Gene omics information

Query gene ID	Contig316_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.85	94.5	Contig316_s_at	Contig316	-	-	2e-24	At5g59970	histone H4	S.X.	H.G.	Please select
0.92	98.4	Contig7671_at	Contig7671	-	-	4e-34	At2g27200	GTP-binding family protein	S.X.	H.G.	Please select
0.89	95.4	Contig20758_at	Contig20758	-	-	2e+0	At1g26796	-	S.X.	H.G.	Please select
0.86	94.8	HK05G18r_at	HK05G18r	-	-	7e+0	At4g01023	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.86	94.8	Mla13_div5_x_at	Mla13_div5	-	-	2e-1	At5g22660	F-box family protein	S.X.	H.G.	Please select
0.86	94.8	HVSMEa0011L19r2_x_at	HVSMEa0011L19r2	-	-	5e-2	At3g50210	2-oxoacid-dependent oxidase, putative	S.X.	H.G.	Please select
0.84	94.3	Contig7669_s_at	Contig7669	-	-	1e+0	At5g63905	unknown protein	S.X.	H.G.	Please select
0.83	94.0	HU13H10u_at	HU13H10u	-	-	4e+0	At5g19530	ACL5 (ACAULIS 5)	S.X.	H.G.	Please select
0.82	93.1	HF16B18r_at	HF16B18r	-	-	4e+0	At5g26080	proline-rich family protein	S.X.	H.G.	Please select
0.82	93.1	HW02P01u_s_at	HW02P01u	-	-	1e+0	At5g63905	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
55.0	100.0	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
23.8	99.8	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
13.7	99.5	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
12.1	99.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
12.0	99.3	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.2	99.1	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.6	98.8	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.4	98.8	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
8.0	98.7	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.6	98.2	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.66	0	664	Contig160_s_at	Contig160	-	-	2e-20	At5g59690	histone H4	C.G.	S.X.	Please select
0.47	0	634	Contig122_at	Contig122	-	-	9e-27	At5g59690	histone H4	C.G.	S.X.	Please select
0.56	9e-173	605	EBem06_SQ004_E23_s_at	EBem06_SQ004_E23	-	-	9e-23	At5g59690	histone H4	C.G.	S.X.	Please select
0.47	1e-168	591	Contig234_s_at	Contig234	-	-	3e-20	At5g59690	histone H4	C.G.	S.X.	Please select
0.76	1e-168	591	bags12a06_at	bags12a06	-	-	2e-20	At5g59970	histone H4	C.G.	S.X.	Please select
0.46	5e-153	539	Contig174_x_at	Contig174	-	-	7e-24	At5g59690	histone H4	C.G.	S.X.	Please select
0.47	5e-153	539	Contig59_x_at	Contig59	-	-	6e-24	At5g59690	histone H4	C.G.	S.X.	Please select
0.55	7e-152	535	Contig117_at	Contig117	-	-	3e-26	At5g59690	histone H4	C.G.	S.X.	Please select
0.47	7e-149	525	Contig197_at	Contig197	-	-	1e-24	At5g59690	histone H4	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	2e-24	113	Arabidopsis thaliana	At5g59970	836119	histone H4	F:DNA binding;P:nucleosome assembly;C:vacuole;MOPFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.48	4e-88	325	Glycine max	PsAffx.C1000260_s_at	PsAffx.C1000260	-	-	9e-10	At5g59690	histone H4	C.G.	S.X.	Please select
0.49	3e-129	462	Oryza sativa	Os09g0433600	AK058686.1	-	Histone H4	2e-20	At1g07660	histone H4	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.31	2e-22	107	Populus trichocarpa	Ptp.6669.1.S1_at	CX170418	histone H4	-	5e-55	At1g07660	histone H4	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.54	6e-151	533	Triticum aestivum	Ta.10329.9.S1_a_at	CA728584	-	-	9e-20	At5g59690	histone H4	C.G.	S.X.	Please select
0.36	5e-16	83	Vitis vinifera	1613076_at	CB970842	-	-	2e-42	At5g59690	histone H4	C.G.	S.X.	Please select
0.44	2e-121	434	Zea mays	Zm.6721.12.A1_s_at	BG265991	Histone H4	-	6e-18	At1g07660	histone H4	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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