Gene omics information

Query gene ID	Contig3102_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig3102_at	Contig3102	-	-	2e-13	At5g66510	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	S.X.	H.G.	Please select
0.55	72.0	Contig3100_at	Contig3100	-	-	1e-5	At4g16830	nuclear RNA-binding protein (RGGA)	S.X.	H.G.	Please select
0.55	72.0	Contig2575_s_at	Contig2575	-	-	2e-1	At4g27540	PRA1.H (PRENYLATED RAB ACCEPTOR 1.H)	S.X.	H.G.	Please select
0.33	42.6	Contig4366_at	Contig4366	-	-	5e-16	At5g49810	MMT	S.X.	H.G.	Please select
0.30	37.0	Contig3850_at	Contig3850	-	-	1e-57	At1g79210	20S proteasome alpha subunit B, putative	S.X.	H.G.	Please select
0.10	8.4	Contig4563_at	Contig4563	-	-	5e-15	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.2	98.0	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
4.0	96.0	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.9	95.8	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.8	95.7	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
3.6	95.3	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.3	94.6	GSM146357	Golden Promise Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.3	94.6	GSM398255	Martin_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.2	94.3	GSM146363	Maythorpe Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.2	94.3	GSM398257	Martin_3d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.1	94.1	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.99	0	2327	Contig3102_s_at	Contig3102	-	-	2e-13	At5g66510	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	C.G.	S.X.	Please select
0.51	0	755	HS17M23u_at	HS17M23u	-	-	7e-5	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.20	2e-23	109	Contig4878_at	Contig4878	-	-	8e-19	At1g47260	GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)	C.G.	S.X.	Please select
0.24	2e-18	93	HB24H11r_s_at	HB24H11r	-	-	8e-1	At3g10590	myb family transcription factor	C.G.	S.X.	Please select
0.02	7e-2	38	Contig9518_at	Contig9518	-	-	5e+0	At5g46160	ribosomal protein L14 family protein / huellenlos paralog (HLP)	C.G.	S.X.	Please select
0.01	7e-2	38	Contig8045_at	Contig8045	-	-	2e-1	At5g58200	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	36	Contig15086_at	Contig15086	-	-	6e-4	At5g40570	surfeit locus protein 2 family protein / SURF2 family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig13615_at	Contig13615	-	-	1e-5	At4g15120	VQ motif-containing protein	C.G.	S.X.	Please select
0.01	3e-1	36	Contig112_at	Contig112	-	-	2e-3	At5g23950	C2 domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	2e-13	77	Arabidopsis thaliana	At5g66510	836783	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.18	8e-29	129	Glycine max	Gma.16388.1.S1_at	CD403252	-	-	1e-42	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.56	1e-167	591	Oryza sativa	Os01g0283100	AK071713.1	-	Ferripyochelin-binding protein-like	1e-35	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.24	1e-73	278	Populus trichocarpa	Ptp.2146.1.S1_at	CK088192	hypothetical protein	-	5e-109	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.76	0	1120	Triticum aestivum	Ta.3097.1.S1_at	CD937885	-	-	2e-7	At5g66510	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	C.G.	S.X.	Please select
0.22	2e-60	232	Vitis vinifera	1608449_at	CB349956	hypothetical protein LOC100247109	-	6e-72	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.52	0	634	Zea mays	Zm.15626.1.S1_at	CA404507	-	-	1e-8	At5g66510	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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