Gene omics information

Query gene ID	Contig30_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig30_s_at	Contig30	-	-	4e-19	At5g59690	histone H4	S.X.	H.G.	Please select
0.77	90.8	Contig4072_at	Contig4072	-	-	2e+0	At2g31610	40S ribosomal protein S3 (RPS3A)	S.X.	H.G.	Please select
0.56	74.3	HD13H12r_s_at	HD13H12r	-	-	2e-1	At3g28710	H+-transporting two-sector ATPase, putative	S.X.	H.G.	Please select
0.55	72.0	Contig3558_s_at	Contig3558	-	-	2e-15	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	S.X.	H.G.	Please select
0.42	55.2	Contig3659_at	Contig3659	-	-	3e-7	At4g29060	emb2726 (embryo defective 2726)	S.X.	H.G.	Please select
0.23	26.1	Contig3806_s_at	Contig3806	-	-	1e-3	At2g43710	SSI2	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.9	99.4	GSM68890	3 h control replicate 2	GSE3097	Barley1 salinity stress study
10.8	99.2	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.8	99.2	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
10.8	99.2	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.1	99.1	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.9	98.9	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
8.7	98.9	GSM146370	Golden Promise shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.6	98.8	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.4	98.8	GSM130800	control, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
8.4	98.8	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1304	Contig30_at	Contig30	-	-	4e-19	At5g59690	histone H4	C.G.	S.X.	Please select
0.74	0	632	Contig131_at	Contig131	-	-	1e-21	At5g59690	histone H4	C.G.	S.X.	Please select
0.46	7e-155	545	Contig117_at	Contig117	-	-	3e-26	At5g59690	histone H4	C.G.	S.X.	Please select
0.47	1e-147	521	Contig174_x_at	Contig174	-	-	7e-24	At5g59690	histone H4	C.G.	S.X.	Please select
0.47	1e-147	521	Contig59_x_at	Contig59	-	-	6e-24	At5g59690	histone H4	C.G.	S.X.	Please select
0.49	2e-145	513	Contig659_at	Contig659	-	-	2e-26	At5g59690	histone H4	C.G.	S.X.	Please select
0.49	2e-142	504	Contig197_at	Contig197	-	-	1e-24	At5g59690	histone H4	C.G.	S.X.	Please select
0.49	2e-142	504	Contig197_s_at	Contig197	-	-	1e-24	At5g59690	histone H4	C.G.	S.X.	Please select
0.45	4e-141	500	Contig500_at	Contig500	-	-	4e-19	At5g59690	histone H4	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	4e-19	95	Arabidopsis thaliana	At5g59690	836090	histone H4	F:DNA binding;P:nucleosome assembly;C:thylakoid;MOPFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.51	1e-90	333	Glycine max	PsAffx.C1000260_s_at	PsAffx.C1000260	-	-	9e-10	At5g59690	histone H4	C.G.	S.X.	Please select
0.52	1e-134	480	Oryza sativa	Os09g0433600	AK058686.1	-	Histone H4	2e-20	At1g07660	histone H4	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.34	2e-24	113	Populus trichocarpa	PtpAffx.104205.1.A1_at	CV277856	-	-	1e-25	At5g59690	histone H4	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.68	4e-158	557	Triticum aestivum	Ta.10329.8.S1_x_at	CK211459	-	-	3e-20	At5g59690	histone H4	C.G.	S.X.	Please select
0.39	1e-19	95	Vitis vinifera	1613076_at	CB970842	-	-	2e-42	At5g59690	histone H4	C.G.	S.X.	Please select
0.47	7e-130	462	Zea mays	Zm.6721.9.A1_a_at	BM380489	Histone H4	-	6e-18	At5g59970	histone H4	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage