Gene omics information

Query gene ID	Contig3074_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.86	94.8	Contig3074_at	Contig3074	-	-	6e+0	At3g52090	NRPB11	S.X.	H.G.	Please select
0.65	81.4	HK04G23r_s_at	HK04G23r	-	-	1e+1	At5g57280	methyltransferase	S.X.	H.G.	Please select
0.58	74.9	HK05B20r_s_at	HK05B20r	-	-	1e+0	At1g27000	bZIP family transcription factor	S.X.	H.G.	Please select
0.57	74.9	Contig3070_s_at	Contig3070	-	-	8e+0	At5g13260	unknown protein	S.X.	H.G.	Please select
0.56	74.3	Contig15199_at	Contig15199	-	-	4e+0	At2g40150	-	S.X.	H.G.	Please select
0.50	66.9	Contig4561_at	Contig4561	-	-	2e-69	At5g58290	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)	S.X.	H.G.	Please select
0.45	59.3	Contig23245_at	Contig23245	-	-	5e-4	At5g60550	GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2)	S.X.	H.G.	Please select
0.45	59.3	Contig25106_at	Contig25106	-	-	4e+0	At5g64990	AtRABH1a (Arabidopsis Rab GTPase homolog H1a)	S.X.	H.G.	Please select
0.44	58.9	Contig3070_at	Contig3070	-	-	8e+0	At5g13260	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig4560_x_at	Contig4560	-	-	2e-1	At1g29000	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.6	99.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
11.3	99.3	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.9	99.2	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.8	99.2	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.8	98.9	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.5	98.8	GSM160831	7% SWC rep1	GSE6990	Barley drought stress
7.6	98.6	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
7.5	98.6	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.5	98.6	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
6.9	98.3	GSM160826	19% SWC rep3	GSE6990	Barley drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.64	0	747	Contig3063_x_at	Contig3063	-	-	3e-1	At3g51780	ATBAG4 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 4)	C.G.	S.X.	Please select
0.64	0	747	Contig3063_s_at	Contig3063	-	-	3e-1	At3g51780	ATBAG4 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 4)	C.G.	S.X.	Please select
0.64	1e-150	531	Contig3062_x_at	Contig3062	-	-	3e+0	At1g58235	unknown protein	C.G.	S.X.	Please select
0.52	8e-127	452	HB14A07r_x_at	HB14A07r	-	-	3e+0	At2g37435	cysteine-type endopeptidase inhibitor	C.G.	S.X.	Please select
0.22	1e-104	379	Contig3067_at	Contig3067	-	-	3e+0	At5g57815	cytochrome c oxidase subunit 6b, putative	C.G.	S.X.	Please select
0.48	5e-88	323	Contig3070_s_at	Contig3070	-	-	8e+0	At5g13260	unknown protein	C.G.	S.X.	Please select
0.48	5e-88	323	Contig3070_at	Contig3070	-	-	8e+0	At5g13260	unknown protein	C.G.	S.X.	Please select
0.17	2e-66	252	Contig3066_s_at	Contig3066	-	-	3e+0	At3g05950	germin-like protein, putative	C.G.	S.X.	Please select
0.17	2e-66	252	Contig3066_at	Contig3066	-	-	3e+0	At3g05950	germin-like protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e+0	32	Arabidopsis thaliana	At3g52090	824372	NRPB11	Non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB11 and the E. oli RNA polymerase alpha subunit.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	36	Glycine max	Gma.374.1.A1_at	AW309650	-	-	1e-3	At3g29250	copper ion binding / oxidoreductase	C.G.	S.X.	Please select
0.03	3e+0	34	Oryza sativa	OsAffx.2379.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.119039.1.S1_at	DN486369	hypothetical protein	-	8e-14	At5g05970	NEDD1 (NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	6e+0	32	Triticum aestivum	TaAffx.1170.1.S1_at	CK210809	-	-	5e-3	At5g39240	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1621524_at	CA812233	-	-	1e+0	At1g49560	myb family transcription factor	C.G.	S.X.	Please select
0.03	1e+1	30	Zea mays	ZmAffx.70.1.A1_at	AI665164	-	-	8e-1	At2g37780	DC1 domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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