Gene omics information

Query gene ID	Contig3070_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.36	47.1	Contig3070_s_at	Contig3070	-	-	8e+0	At5g13260	unknown protein	S.X.	H.G.	Please select
0.60	77.3	Contig4560_x_at	Contig4560	-	-	2e-1	At1g29000	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select
0.55	72.0	Contig3871_at	Contig3871	-	-	3e-41	At5g20570	RBX1 (RING-BOX 1)	S.X.	H.G.	Please select
0.55	72.0	Contig4561_at	Contig4561	-	-	2e-69	At5g58290	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)	S.X.	H.G.	Please select
0.47	62.2	HK05B20r_s_at	HK05B20r	-	-	1e+0	At1g27000	bZIP family transcription factor	S.X.	H.G.	Please select
0.40	53.1	HK04G23r_s_at	HK04G23r	-	-	1e+1	At5g57280	methyltransferase	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.0	98.9	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.8	98.6	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.9	98.3	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.7	98.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.4	98.1	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM68904	27 h salt stressed replicate 1	GSE3097	Barley1 salinity stress study
4.7	96.9	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.6	96.8	GSM160823	19% SWC rep1	GSE6990	Barley drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	2028	Contig3070_at	Contig3070	-	-	8e+0	At5g13260	unknown protein	C.G.	S.X.	Please select
0.47	0	767	rbags24o03_at	rbags24o03	-	-	3e-1	At5g58784	dehydrodolichyl diphosphate synthase	C.G.	S.X.	Please select
0.48	2e-85	315	Contig3074_at	Contig3074	-	-	6e+0	At3g52090	NRPB11	C.G.	S.X.	Please select
0.42	7e-82	303	Contig3063_x_at	Contig3063	-	-	3e-1	At3g51780	ATBAG4 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 4)	C.G.	S.X.	Please select
0.42	7e-82	303	Contig3063_s_at	Contig3063	-	-	3e-1	At3g51780	ATBAG4 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 4)	C.G.	S.X.	Please select
0.34	2e-79	295	HB14A07r_x_at	HB14A07r	-	-	3e+0	At2g37435	cysteine-type endopeptidase inhibitor	C.G.	S.X.	Please select
0.48	4e-77	287	Contig3062_x_at	Contig3062	-	-	3e+0	At1g58235	unknown protein	C.G.	S.X.	Please select
0.18	1e-64	246	Contig3067_at	Contig3067	-	-	3e+0	At5g57815	cytochrome c oxidase subunit 6b, putative	C.G.	S.X.	Please select
0.19	4e-49	194	Contig3065_x_at	Contig3065	-	-	1e+1	At5g67190	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	8e+0	32	Arabidopsis thaliana	At5g13260	831167	unknown protein	F:unknown;P:biological_process unknown;C:unknown;MFOPBAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-2	40	Glycine max	PsAffx.psHB005xN04f_at	PsAffx.psHB005xN04f	-	-	1e+1	At3g04943	LCR41 (Low-molecular-weight cysteine-rich 41)	C.G.	S.X.	Please select
0.03	3e-1	38	Oryza sativa	OsAffx.22099.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	PtpAffx.8410.2.A1_a_at	CV255782	hypothetical protein	-	5e-21	At4g19210	ATRLI2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.08	6e-10	65	Triticum aestivum	TaAffx.89616.1.S1_at	CA610085	-	-	2e-4	At2g04700	ferredoxin thioredoxin reductase catalytic beta chain family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1615013_at	CB341279	-	-	3e-10	At4g28706	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zea mays	Zm.8147.1.A1_at	BM073080	hypothetical protein LOC100273624	-	5e+0	At2g15830	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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