Gene omics information

Query gene ID	Contig3065_x_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	88.7	Contig3065_x_at	Contig3065	-	-	1e+1	At5g67190	AP2 domain-containing transcription factor, putative	S.X.	H.G.	Please select
0.57	74.9	Contig17672_at	Contig17672	-	-	2e-16	At5g23300	PYRD (pyrimidine d)	S.X.	H.G.	Please select
0.42	55.2	Contig15477_at	Contig15477	-	-	4e-1	At5g14540	proline-rich family protein	S.X.	H.G.	Please select
0.40	53.1	Contig16296_at	Contig16296	-	-	6e+0	At5g19510	elongation factor 1B alpha-subunit 2 (eEF1Balpha2)	S.X.	H.G.	Please select
0.36	47.1	Contig22351_at	Contig22351	-	-	2e+0	At3g20020	PRMT6 (PROTEIN ARGININE METHYLTRANSFERASE 6)	S.X.	H.G.	Please select
0.33	42.6	Contig20455_at	Contig20455	-	-	2e+0	At5g48220	indole-3-glycerol phosphate synthase, putative	S.X.	H.G.	Please select
0.33	42.6	HT05P07u_s_at	HT05P07u	-	-	3e+0	At1g32585	VQ motif-containing protein-related	S.X.	H.G.	Please select
0.32	40.3	Contig7911_at	Contig7911	-	-	2e-4	At4g28400	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please select
0.32	40.3	Contig13274_at	Contig13274	-	-	9e-3	At1g71690	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.3	98.1	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
6.1	98.0	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.4	97.5	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
5.1	97.3	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8	97.0	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
4.6	96.8	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
4.5	96.7	GSM160815	drought control rep3	GSE6990	Barley drought stress
4.0	96.0	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	8e-52	200	HB14A07r_x_at	HB14A07r	-	-	3e+0	At2g37435	cysteine-type endopeptidase inhibitor	C.G.	S.X.	Please select
0.26	8e-52	200	Contig3074_at	Contig3074	-	-	6e+0	At3g52090	NRPB11	C.G.	S.X.	Please select
0.28	8e-52	200	Contig3063_x_at	Contig3063	-	-	3e-1	At3g51780	ATBAG4 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 4)	C.G.	S.X.	Please select
0.28	8e-52	200	Contig3063_s_at	Contig3063	-	-	3e-1	At3g51780	ATBAG4 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 4)	C.G.	S.X.	Please select
0.38	3e-48	188	Contig3062_x_at	Contig3062	-	-	3e+0	At1g58235	unknown protein	C.G.	S.X.	Please select
0.19	5e-47	184	Contig3070_s_at	Contig3070	-	-	8e+0	At5g13260	unknown protein	C.G.	S.X.	Please select
0.19	5e-47	184	Contig3070_at	Contig3070	-	-	8e+0	At5g13260	unknown protein	C.G.	S.X.	Please select
0.14	3e-42	169	Contig3067_at	Contig3067	-	-	3e+0	At5g57815	cytochrome c oxidase subunit 6b, putative	C.G.	S.X.	Please select
0.14	7e-37	151	Contig3066_s_at	Contig3066	-	-	3e+0	At3g05950	germin-like protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+1	28	Arabidopsis thaliana	At5g67190	836854	AP2 domain-containing transcription factor, putative	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e+0	32	Glycine max	GmaAffx.15015.1.S1_at	BI787734	-	-	1e-9	At2g31230	ATERF15 (Ethylene-responsive element binding factor 15)	C.G.	S.X.	Please select
0.07	4e-1	34	Oryza sativa	OsAffx.2379.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	32	Populus trichocarpa	Ptp.1803.1.A1_at	CK092809	hypothetical protein	-	4e+0	At2g25185	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	4e+0	30	Triticum aestivum	TaAffx.53808.1.S1_at	CA688923	-	-	3e+0	At5g14740	CA2 (CARBONIC ANHYDRASE 2)	C.G.	S.X.	Please select
0.04	4e+0	28	Vitis vinifera	1613771_at	CF210312	-	-	1e+0	At2g46000	unknown protein	C.G.	S.X.	Please select
0.05	2e+1	26	Zea mays	ZmAffx.1171.1.A1_at	AW787611	Hypothetical protein LOC100216839	-	3e+0	At2g05752	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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