Gene omics information

Query gene ID	Contig3054_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig3054_at	Contig3054	-	-	3e-5	At4g28050	TET7 (TETRASPANIN7)	S.X.	H.G.	Please select
0.91	98.1	HV_CEb0010F15r2_at	HV_CEb0010F15r2	-	-	5e-6	At2g45500	ATP binding / nucleoside-triphosphatase/ nucleotide binding	S.X.	H.G.	Please select
0.73	88.7	Contig22222_at	Contig22222	-	-	1e+0	At5g64160	unknown protein	S.X.	H.G.	Please select
0.50	66.9	HVSMEc0001K23f2_s_at	HVSMEc0001K23f2	-	-	4e+0	At5g24190	-	S.X.	H.G.	Please select
0.46	61.0	HM10J16r_at	HM10J16r	-	-	4e+0	At5g64400	-	S.X.	H.G.	Please select
0.43	56.4	Contig9685_at	Contig9685	-	-	2e-3	At1g14990	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
94.8	100.0	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
87.6	100.0	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
52.0	100.0	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
27.9	99.8	GSM71141	OWB-D stress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
21.8	99.8	GSM71140	OWB-D stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
20.1	99.7	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
17.7	99.7	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
14.0	99.5	GSM71139	OWB-D stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
11.9	99.3	GSM71145	OWB-D unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
10.5	99.2	GSM71146	OWB-D unstress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	1935	Contig3054_s_at	Contig3054	-	-	3e-5	At4g28050	TET7 (TETRASPANIN7)	C.G.	S.X.	Please select
0.54	7e-91	333	HVSMEf0019G03r2_x_at	HVSMEf0019G03r2	-	-	1e-2	At2g23810	TET8 (TETRASPANIN8)	C.G.	S.X.	Please select
0.18	5e-15	81	Contig7785_at	Contig7785	-	-	3e-14	At4g28050	TET7 (TETRASPANIN7)	C.G.	S.X.	Please select
0.12	2e-8	59	Contig6728_at	Contig6728	-	-	6e-1	At5g23030	TET12 (TETRASPANIN12)	C.G.	S.X.	Please select
0.06	7e-8	57	HA28N02r_at	HA28N02r	-	-	1e-8	At2g23810	TET8 (TETRASPANIN8)	C.G.	S.X.	Please select
0.06	7e-8	57	HA28N02r_s_at	HA28N02r	-	-	1e-8	At2g23810	TET8 (TETRASPANIN8)	C.G.	S.X.	Please select
0.01	6e-2	38	Contig5704_at	Contig5704	-	-	2e-1	At1g49640	hydrolase	C.G.	S.X.	Please select
0.03	6e-2	38	Contig14263_at	Contig14263	-	-	2e+0	At5g22650	HD2B (HISTONE DEACETYLASE 2B)	C.G.	S.X.	Please select
0.02	6e-2	38	Contig8961_at	Contig8961	-	-	1e-1	At5g66400	RAB18 (RESPONSIVE TO ABA 18)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	3e-5	50	Arabidopsis thaliana	At4g28050	828920	TET7 (TETRASPANIN7)	Member of TETRASPANIN family	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	2e-22	107	Glycine max	Gma.2590.7.S1_at	CA783976	-	-	7e-10	At4g28050	TET7 (TETRASPANIN7)	C.G.	S.X.	Please select
0.43	1e-98	361	Oryza sativa	Os09g0425900	AK061801.1	-	Senescence-associated protein 5	1e-2	At4g28050	TET7 (TETRASPANIN7)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	1e-2	42	Populus trichocarpa	PtpAffx.14093.1.A1_s_at	CV232681	hypothetical protein	-	4e-1	At4g28050	TET7 (TETRASPANIN7)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.75	0	989	Triticum aestivum	Ta.14022.3.S1_at	CA689236	-	-	2e-7	At4g28050	TET7 (TETRASPANIN7)	C.G.	S.X.	Please select
0.09	2e-4	46	Vitis vinifera	1608186_at	CB007992	hypothetical protein LOC100243286	-	7e-4	At4g30430	TET9 (TETRASPANIN9)	C.G.	S.X.	Please select
0.46	2e-84	311	Zea mays	Zm.1425.1.S1_at	BM380501	senescence-associated protein DH	-	3e-9	At2g23810	TET8 (TETRASPANIN8)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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