Gene omics information

Query gene ID	Contig3051_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig3051_s_at	Contig3051	-	-	8e-6	At3g11930	universal stress protein (USP) family protein	S.X.	H.G.	Please select
0.83	94.0	Contig17530_at	Contig17530	-	-	6e-3	At4g00380	XH/XS domain-containing protein / XS zinc finger domain-containing protein	S.X.	H.G.	Please select
0.80	92.5	Contig1752_s_at	Contig1752	-	-	3e-7	At1g15270	-	S.X.	H.G.	Please select
0.73	88.7	Contig21476_at	Contig21476	-	-	5e+0	At5g39581	unknown protein	S.X.	H.G.	Please select
0.35	45.1	Contig21980_at	Contig21980	-	-	1e-1	At3g24450	copper-binding family protein	S.X.	H.G.	Please select
0.27	32.1	Contig14554_at	Contig14554	-	-	7e+0	At5g06240	emb2735 (embryo defective 2735)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.2	99.9	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
30.1	99.9	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
27.6	99.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
26.8	99.8	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
26.5	99.8	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
22.8	99.8	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
22.6	99.8	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
20.4	99.7	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
18.8	99.7	GSM431570	pathogen isolates: Mock inoculated control - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
16.3	99.6	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.47	7e-125	446	Contig3050_at	Contig3050	-	-	2e-3	At2g47710	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.10	3e-25	115	HVSMEa0005G02f2_s_at	HVSMEa0005G02f2	-	-	2e-2	At4g31740	-	C.G.	S.X.	Please select
0.09	1e-12	73	Contig11090_at	Contig11090	-	-	2e-6	At2g47710	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.02	1e-6	54	Contig13989_at	Contig13989	-	-	3e-12	At5g39660	CDF2 (CYCLING DOF FACTOR 2)	C.G.	S.X.	Please select
0.07	4e-6	52	Contig7507_at	Contig7507	-	-	4e-1	At5g19810	proline-rich extensin-like family protein	C.G.	S.X.	Please select
0.03	2e-5	50	Contig13075_at	Contig13075	-	-	1e+0	At5g54900	ATRBP45A (RNA-binding protein 45A)	C.G.	S.X.	Please select
0.07	6e-5	48	HVSMEa0006D18r2_s_at	HVSMEa0006D18r2	-	-	5e+0	At2g36310	URH1 (URIDINE-RIBOHYDROLASE 1)	C.G.	S.X.	Please select
0.03	2e-4	46	Contig18757_at	Contig18757	-	-	2e+0	At3g27010	AT-TCP20	C.G.	S.X.	Please select
0.02	2e-4	46	Contig1454_at	Contig1454	-	-	4e-52	At3g25520	ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	8e-6	52	Arabidopsis thaliana	At3g11930	820366	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e-4	46	Glycine max	PsAffx.CL1412Contig1_at	PsAffx.CL1412Contig1	-	-	3e+1	At5g52960	unknown protein	C.G.	S.X.	Please select
0.37	8e-60	232	Oryza sativa	Os07g0673400	AK073356.1	-	Universal stress protein (Usp) family protein	5e-4	At2g47710	universal stress protein (USP) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-5	52	Populus trichocarpa	PtpAffx.121254.1.A1_at	CV249707	hypothetical protein	-	6e-21	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.54	9e-123	440	Triticum aestivum	Ta.24665.2.S1_at	CD452527	-	-	1e-4	At2g47710	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.03	4e-2	38	Vitis vinifera	1609780_at	CA810742	hypothetical protein LOC100249069	-	4e-1	At1g04910	unknown protein	C.G.	S.X.	Please select
0.20	5e-39	161	Zea mays	Zm.9409.1.A1_at	AY108164.1	-	-	3e-1	At1g79850	RPS17 (RIBOSOMAL PROTEIN S17)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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