Gene omics information

Query gene ID	Contig2_s_at
Gene name	plasma membrane proton ATPase
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig2_s_at	Contig2	plasma membrane proton ATPase	-	3e-4	At2g07560	AHA6 (Arabidopsis H(+)-ATPase 6)	S.X.	H.G.	Please select
0.91	98.1	HO06I09S_at	HO06I09S	-	-	3e+0	At4g33925	unknown protein	S.X.	H.G.	Please select
0.83	94.0	HV06K22u_at	HV06K22u	-	-	9e+0	At3g49645	unknown protein	S.X.	H.G.	Please select
0.50	66.9	HV10P15u_at	HV10P15u	-	-	3e+0	At2g28725	unknown protein	S.X.	H.G.	Please select
0.46	61.0	Contig17521_at	Contig17521	-	-	2e+0	At5g40930	TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4)	S.X.	H.G.	Please select
0.26	30.4	Contig5424_at	Contig5424	-	-	6e-1	At1g80400	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.0	96.0	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.0	96.0	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.6	95.3	GSM419972	Lemma_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.6	95.3	GSM440957	Control lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.1	94.1	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.1	94.1	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.7	92.7	GSM372960	genotype: Mla6 - pathogen isolates: K1 - time: 8 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6	92.3	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.6	92.3	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	973	Contig2_at	Contig2	-	-	3e-4	At2g07560	AHA6 (Arabidopsis H(+)-ATPase 6)	C.G.	S.X.	Please select
0.23	0	684	Contig680_at	Contig680	-	-	1e-99	At4g30190	AHA2	C.G.	S.X.	Please select
0.38	3e-107	387	Contig268_at	Contig268	-	-	4e-6	At5g57350	AHA3	C.G.	S.X.	Please select
0.07	2e-3	42	Contig388_at	Contig388	-	-	1e-74	At3g47950	AHA4	C.G.	S.X.	Please select
0.03	5e-1	34	Contig18188_at	Contig18188	-	-	2e+0	At1g26820	RNS3 (RIBONUCLEASE 3)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig12136_at	Contig12136	-	-	2e+0	At4g10115	SCRL20 (SCR-Like 20)	C.G.	S.X.	Please select
0.03	2e+0	32	Contig10463_at	Contig10463	-	-	4e-1	At5g28690	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig15795_at	Contig15795	-	-	6e+0	At5g30490	-	C.G.	S.X.	Please select
0.02	8e+0	30	Contig7883_at	Contig7883	-	-	3e-18	At1g61620	phosphoinositide binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	3e-4	46	Arabidopsis thaliana	At2g07560	815329	AHA6 (Arabidopsis H(+)-ATPase 6)	F:ATPase activity;P:cation transport, metabolic process, ATP biosynthetic process;C:plasma membrane, membrane;BMOFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.34	2e-11	69	Glycine max	GmaAffx.59325.1.S1_at	BM890908	-	-	2e-33	At5g57350	AHA3	C.G.	S.X.	Please select
0.16	1e-69	264	Oryza sativa	Os04g0656100	AK073066.1	-	H(+)-transporting ATPase (EC 3.6.1.35)	4e-103	At4g30190	AHA2	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.20	4e-13	75	Populus trichocarpa	PtpAffx.142862.1.S1_at	BU884336	autoinhibited H+ ATPase /// autoinhibited H+ ATPase	-	3e-85	At4g30190	AHA2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.51	8e-51	200	Triticum aestivum	TaAffx.30349.1.S1_at	CA625992	-	-	5e-24	At4g30190	AHA2	C.G.	S.X.	Please select
0.17	5e-6	50	Vitis vinifera	1612886_at	CF608143	hypothetical protein LOC100242786	-	3e-48	At5g57350	AHA3	C.G.	S.X.	Please select
0.23	1e-47	188	Zea mays	Zm.14838.1.A1_at	AJ539534.1	proton-exporting ATPase	-	1e-65	At4g30190	AHA2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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