Gene omics information

Query gene ID	Contig2937_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig2937_s_at	Contig2937	-	-	9e-27	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	S.X.	H.G.	Please select
0.80	92.5	Contig5295_at	Contig5295	-	-	2e-113	At2g27210	kelch repeat-containing serine/threonine phosphoesterase family protein	S.X.	H.G.	Please select
0.67	84.7	Contig8068_at	Contig8068	-	-	3e+0	At2g30560	glycine-rich protein	S.X.	H.G.	Please select
0.50	66.9	Contig12495_at	Contig12495	-	-	4e-11	At4g31790	diphthine synthase, putative (DPH5)	S.X.	H.G.	Please select
0.50	66.9	Contig2046_at	Contig2046	-	-	5e+0	At1g60815	RALFL7 (RALF-LIKE 7)	S.X.	H.G.	Please select
0.33	42.6	Contig7725_at	Contig7725	-	-	8e-1	At1g22180	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	S.X.	H.G.	Please select
0.21	22.6	Contig841_x_at	Contig841	-	-	1e-35	At2g34420	LHB1B2	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.2	96.3	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0	96.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.4	94.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.3	94.6	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
2.9	93.4	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.9	93.4	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e+0	32	Contig4123_at	Contig4123	-	-	3e-10	At2g14740	ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3)	C.G.	S.X.	Please select
0.01	3e+0	32	Contig11674_at	Contig11674	-	-	3e-1	At5g49420	MADS-box protein (AGL84)	C.G.	S.X.	Please select
0.02	3e+0	32	HY04O03u_at	HY04O03u	-	-	2e-1	At3g22210	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	HVSMEn0025O19r2_at	HVSMEn0025O19r2	-	-	4e+0	At5g53120	SPDS3 (SPERMIDINE SYNTHASE 3)	C.G.	S.X.	Please select
0.03	3e+0	32	HVSMEk0005B11r2_at	HVSMEk0005B11r2	-	-	3e+0	At5g37200	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig26035_at	Contig26035	-	-	2e+0	At1g10600	-	C.G.	S.X.	Please select
0.02	3e+0	32	Contig25331_at	Contig25331	-	-	5e+0	At5g15790	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig24208_at	Contig24208	-	-	1e+0	At3g23390	60S ribosomal protein L36a/L44 (RPL36aA)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig21450_at	Contig21450	-	-	7e+0	At4g01510	ARV2	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	9e-27	121	Arabidopsis thaliana	At3g25800	822171	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	one of three genes encoding the protein phosphatase 2A regulatory subunit	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.33	4e-30	133	Glycine max	Gma.3667.1.S1_at	BE822457	-	-	1e-35	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	C.G.	S.X.	Please select
0.31	4e-163	575	Oryza sativa	Os09g0249700	AK069757.1	-	Protein phosphatase 2A A subunit (Phosphatase 2Aregulatory A subunit)	3e-87	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.23	5e-32	139	Populus trichocarpa	Ptp.3096.1.A1_s_at	CV257834	hypothetical protein	-	1e-32	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.64	0	1057	Triticum aestivum	Ta.1998.2.S1_a_at	BJ274484	-	-	2e-53	At1g25490	RCN1 (ROOTS CURL IN NPA)	C.G.	S.X.	Please select
0.27	7e-25	113	Vitis vinifera	1614365_at	CF210448	hypothetical protein LOC100266203	-	2e-36	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	C.G.	S.X.	Please select
0.32	1e-110	398	Zea mays	Zm.2099.1.A1_at	BM336997	Protein phosphatase 2A regulatory subunit A	-	4e-74	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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