Gene omics information

Query gene ID	Contig2878_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	Contig2878_at	Contig2878	-	-	4e-1	At3g49630	2-oxoacid-dependent oxidase, putative	S.X.	H.G.	Please select
0.60	77.3	Contig4809_at	Contig4809	-	-	9e-2	At1g64370	unknown protein	S.X.	H.G.	Please select
0.55	72.0	Contig18125_at	Contig18125	-	-	2e-6	At4g13250	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please select
0.55	72.0	HF11O19r_at	HF11O19r	-	-	8e-5	At3g25140	QUA1 (QUASIMODO 1)	S.X.	H.G.	Please select
0.40	53.1	HV_CEb0011B08r2_at	HV_CEb0011B08r2	-	-	4e+0	At3g61880	CYP78A9 (CYTOCHROME P450 78A9)	S.X.	H.G.	Please select
0.35	45.1	Contig8778_s_at	Contig8778	-	-	2e-2	At3g10185	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
45.1	99.9	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
43.6	99.9	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
11.6	99.3	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
10.8	99.2	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
10.4	99.2	GSM261041	Dicktoo-deacclimation-rep3	GSE10329	Low temperature stress in cv. Dicktoo
10.3	99.1	GSM71141	OWB-D stress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
9.1	98.9	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
7.7	98.6	GSM71139	OWB-D stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
7.4	98.5	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
7.2	98.5	GSM71142	OWB-R stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.31	5e-42	171	Contig2877_at	Contig2877	-	-	6e-1	At4g19270	unknown protein	C.G.	S.X.	Please select
0.30	3e-40	165	Contig7394_at	Contig7394	-	-	1e+1	At5g54340	zinc finger (C2H2 type) protein-related	C.G.	S.X.	Please select
0.24	1e-30	133	Contig8009_at	Contig8009	-	-	3e+0	At4g19270	unknown protein	C.G.	S.X.	Please select
0.23	4e-30	131	Contig2873_s_at	Contig2873	-	-	2e-4	At1g31630	AGL86 (AGAMOUS-LIKE 86)	C.G.	S.X.	Please select
0.16	2e-23	109	Contig2876_at	Contig2876	-	-	5e-2	At5g17120	-	C.G.	S.X.	Please select
0.24	2e-13	75	Contig17140_at	Contig17140	-	-	5e+0	At2g23670	YCF37 (Arabidopsis homolog of Synechocystis YCF37)	C.G.	S.X.	Please select
0.07	5e-8	57	Contig7170_at	Contig7170	-	-	2e+0	At1g32540	LOL1 (LSD ONE LIKE 1)	C.G.	S.X.	Please select
0.06	1e-5	50	Contig8819_at	Contig8819	-	-	2e+0	At4g19270	unknown protein	C.G.	S.X.	Please select
0.06	1e-5	50	Contig8819_s_at	Contig8819	-	-	2e+0	At4g19270	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-1	36	Arabidopsis thaliana	At3g49630	824125	2-oxoacid-dependent oxidase, putative	F:oxidoreductase activity, iron ion binding;P:aging, cellular response to starvation;C:endomembrane system;POBFM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	36	Glycine max	GmaAffx.38753.1.S1_at	AI748583	-	-	4e-2	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	C.G.	S.X.	Please select
0.27	1e-39	165	Oryza sativa	Os10g0555600	AF261274.1	-	Beta-expansin precursor	4e-2	At3g06080	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.37401.1.A1_s_at	CV253800	hypothetical protein	-	7e-1	At3g15750	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.73	0	660	Triticum aestivum	Ta.3729.1.A1_at	BJ249762	-	-	5e+0	At2g43840	UDP-glucoronosyl/UDP-glucosyl transferase family protein	C.G.	S.X.	Please select
0.03	2e-3	42	Vitis vinifera	1619576_at	CB834337	-	-	2e+1	At5g51040	unknown protein	C.G.	S.X.	Please select
0.43	5e-54	210	Zea mays	Zm.675.2.A1_at	AF332178.1	beta-expansin 5	-	3e-1	At4g19270	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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