Gene omics information

Query gene ID	Contig2783_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	89.1	Contig2783_s_at	Contig2783	-	-	5e+0	At5g01870	lipid transfer protein, putative	S.X.	H.G.	Please select
0.88	95.2	EBem09_SQ001_L06_s_at	EBem09_SQ001_L06	-	-	5e-1	At5g16470	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.65	81.4	HT06G21u_s_at	HT06G21u	-	-	1e-8	At2g36530	LOS2	S.X.	H.G.	Please select
0.60	77.3	Contig4260_at	Contig4260	-	-	5e-2	At4g37980	ELI3-1 (ELICITOR-ACTIVATED GENE 3-1)	S.X.	H.G.	Please select
0.57	74.9	Contig22861_at	Contig22861	-	-	7e+0	At3g59880	unknown protein	S.X.	H.G.	Please select
0.57	74.9	Contig16073_at	Contig16073	-	-	3e-2	At5g37200	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.55	72.0	Contig9459_at	Contig9459	-	-	1e-2	At5g54800	GPT1	S.X.	H.G.	Please select
0.51	67.5	HA26O09r_s_at	HA26O09r	-	-	6e+0	At3g52780	PAP20	S.X.	H.G.	Please select
0.50	66.9	HY08D02u_s_at	HY08D02u	-	-	6e+0	At2g31180	MYB14 (MYB DOMAIN PROTEIN 14)	S.X.	H.G.	Please select
0.41	53.9	Contig272_s_at	Contig272	-	-	5e-1	At3g45230	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.2	99.6	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
13.0	99.4	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.8	99.1	GSM160831	7% SWC rep1	GSE6990	Barley drought stress
9.6	99.0	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
8.1	98.7	GSM372968	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.9	98.7	GSM310867	lina_without_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
7.8	98.6	GSM372951	genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.7	98.6	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
7.4	98.5	GSM398282	Moroc9-75_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.2	98.5	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	4e-8	57	Contig2779_at	Contig2779	-	-	2e-6	At4g32940	GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)	C.G.	S.X.	Please select
0.04	3e-3	42	Contig3369_s_at	Contig3369	-	-	2e-3	At4g32940	GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)	C.G.	S.X.	Please select
0.08	1e-2	40	HVSMEk0005A23r2_at	HVSMEk0005A23r2	-	-	8e-5	At2g25940	ALPHA-VPE (alpha-vacuolar processing enzyme)	C.G.	S.X.	Please select
0.10	1e-2	40	Contig2780_s_at	Contig2780	-	-	1e-4	At2g25940	ALPHA-VPE (alpha-vacuolar processing enzyme)	C.G.	S.X.	Please select
0.01	6e-1	34	Contig6278_at	Contig6278	-	-	1e+0	At3g10040	transcription factor	C.G.	S.X.	Please select
0.04	6e-1	34	Contig3371_at	Contig3371	-	-	6e-7	At1g62710	BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)	C.G.	S.X.	Please select
0.02	6e-1	34	Contig2843_s_at	Contig2843	-	-	4e-20	At3g06700	60S ribosomal protein L29 (RPL29A)	C.G.	S.X.	Please select
0.02	6e-1	34	Contig19502_at	Contig19502	-	-	7e+0	At5g59613	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Contig19199_at	Contig19199	-	-	5e-1	At4g15550	IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e+0	32	Arabidopsis thaliana	At5g01870	831705	lipid transfer protein, putative	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e-1	36	Glycine max	GmaAffx.1304.1.A1_at	BI967772	-	-	7e-1	At3g01331	-	C.G.	S.X.	Please select
0.21	8e-16	85	Oryza sativa	Os05g0593900	AK058553.1	-	C13 endopeptidase NP1 precursor	5e-2	At3g20210	DELTA-VPE	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e-1	36	Populus trichocarpa	PtpAffx.43358.1.A1_s_at	CV275373	white-brown-complex ABC transporter family	-	2e-2	At1g65410	ATNAP11 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 11)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.56	0	813	Triticum aestivum	Ta.3993.1.S1_at	CA606062	-	-	3e+0	At1g15385	unknown protein	C.G.	S.X.	Please select
0.04	1e-7	56	Vitis vinifera	1621718_at	BQ794503	hypothetical protein LOC100244137	-	5e-26	At2g25940	ALPHA-VPE (alpha-vacuolar processing enzyme)	C.G.	S.X.	Please select
0.04	9e-6	50	Zea mays	Zm.255.1.A1_at	BM080474	Legumain-like protease	-	3e-16	At4g32940	GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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