Gene omics information

Query gene ID	Contig2780_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.96	99.4	Contig2780_s_at	Contig2780	-	-	1e-4	At2g25940	ALPHA-VPE (alpha-vacuolar processing enzyme)	S.X.	H.G.	Please select
0.43	56.4	Contig19081_at	Contig19081	-	-	2e-3	At5g53550	YSL3 (YELLOW STRIPE LIKE 3)	S.X.	H.G.	Please select
0.41	53.9	Contig4988_at	Contig4988	-	-	2e-2	At4g19170	NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4)	S.X.	H.G.	Please select
0.40	53.1	Contig23141_at	Contig23141	-	-	1e+0	At2g42610	LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)	S.X.	H.G.	Please select
0.33	42.6	rbags1i23_s_at	rbags1i23	-	-	2e-16	At1g67430	60S ribosomal protein L17 (RPL17B)	S.X.	H.G.	Please select
0.32	40.3	Contig15493_at	Contig15493	-	-	1e+0	At5g44540	tapetum-specific protein-related	S.X.	H.G.	Please select
0.31	38.6	Contig18503_at	Contig18503	-	-	1e-1	At4g01995	unknown protein	S.X.	H.G.	Please select
0.29	35.5	Contig24618_at	Contig24618	-	-	3e-1	At5g13180	ANAC083 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 83)	S.X.	H.G.	Please select
0.28	35.5	Contig15472_at	Contig15472	-	-	1e+1	At5g43170	AZF3 (ARABIDOPSIS ZINC-FINGER PROTEIN 3)	S.X.	H.G.	Please select
0.28	35.5	Contig11702_at	Contig11702	-	-	4e-2	At1g06150	transcription factor	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.1	97.3	GSM398251	Martin_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.8	97.0	GSM398249	Martin_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.7	96.9	GSM311249	28-4_without_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.6	96.8	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
4.6	96.8	GSM398274	Moroc9-75_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.5	96.7	GSM398273	Moroc9-75_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.4	96.6	GSM398275	Moroc9-75_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.4	96.6	GSM311255	hsp5_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.3	96.4	GSM311256	hsp5_without_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.3	96.4	GSM372956	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.52	1e-147	521	Contig2779_at	Contig2779	-	-	2e-6	At4g32940	GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)	C.G.	S.X.	Please select
0.37	2e-140	498	HVSMEk0005A23r2_at	HVSMEk0005A23r2	-	-	8e-5	At2g25940	ALPHA-VPE (alpha-vacuolar processing enzyme)	C.G.	S.X.	Please select
0.08	2e-10	65	rbags22e20_at	rbags22e20	-	-	2e+0	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	C.G.	S.X.	Please select
0.07	3e-9	61	HW05C10u_x_at	HW05C10u	-	-	7e-1	At3g62320	nucleic acid binding	C.G.	S.X.	Please select
0.07	3e-9	61	HW05C10u_s_at	HW05C10u	-	-	7e-1	At3g62320	nucleic acid binding	C.G.	S.X.	Please select
0.07	3e-9	61	HW05C10u_at	HW05C10u	-	-	7e-1	At3g62320	nucleic acid binding	C.G.	S.X.	Please select
0.04	5e-8	57	Contig18365_at	Contig18365	-	-	1e+0	At1g31760	SWIB complex BAF60b domain-containing protein	C.G.	S.X.	Please select
0.03	3e-6	52	Contig9064_at	Contig9064	-	-	7e+0	Atmg01260	-	C.G.	S.X.	Please select
0.03	3e-6	52	Contig7366_s_at	Contig7366	-	-	3e-1	At3g55450	protein kinase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-4	48	Arabidopsis thaliana	At2g25940	817135	ALPHA-VPE (alpha-vacuolar processing enzyme)	Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e-2	40	Glycine max	Gma.5966.1.S1_at	CD418432	-	-	1e-45	At4g32940	GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)	C.G.	S.X.	Please select
0.24	2e-78	293	Oryza sativa	Os01g0559600	AB025310.1	-	Vacuolar processing enzyme, alpha-isozymeprecursor (EC 3.4.22.-) (Alpha-VPE)	3e-16	At4g32940	GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.102308.2.A1_at	CV229118	hypothetical protein	-	2e-2	At4g08150	KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.77	2e-157	555	Triticum aestivum	Ta.30798.1.A1_at	CD454086	-	-	2e-6	At4g32940	GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)	C.G.	S.X.	Please select
0.04	2e-3	42	Vitis vinifera	1621718_at	BQ794503	hypothetical protein LOC100244137	-	5e-26	At2g25940	ALPHA-VPE (alpha-vacuolar processing enzyme)	C.G.	S.X.	Please select
0.19	5e-51	200	Zea mays	Zm.308.1.S1_at	AF082347.1	C13 endopeptidase NP1 precursor	-	3e-16	At4g32940	GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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