Gene omics information

Query gene ID	Contig2776_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	92.5	Contig2776_at	Contig2776	-	-	5e-20	At3g22890	APS1 (ATP SULFURYLASE 1)	S.X.	H.G.	Please select
0.91	98.1	HF01J12w_s_at	HF01J12w	-	-	4e-1	At2g32310	-	S.X.	H.G.	Please select
0.91	98.1	Contig3337_s_at	Contig3337	-	-	5e-50	At5g59840	Ras-related GTP-binding family protein	S.X.	H.G.	Please select
0.83	94.0	Contig5153_at	Contig5153	chloroplast inner envelope protein-like	-	3e+0	At5g46860	VAM3	S.X.	H.G.	Please select
0.47	62.2	rbags5f04_s_at	rbags5f04	-	-	2e+0	At3g61678	unknown protein	S.X.	H.G.	Please select
0.35	45.1	Contig8498_at	Contig8498	-	-	6e-8	At4g36390	radical SAM domain-containing protein / TRAM domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
37.3	99.9	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
28.1	99.8	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
27.5	99.8	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
24.6	99.8	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
23.9	99.8	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
22.7	99.8	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
21.0	99.7	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
16.6	99.6	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
7.8	98.6	GSM71146	OWB-D unstress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
7.4	98.5	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.53	0	924	HT11A06u_s_at	HT11A06u	-	-	4e-3	At3g22890	APS1 (ATP SULFURYLASE 1)	C.G.	S.X.	Please select
0.16	1e-80	299	HD04M06r_at	HD04M06r	-	-	2e-2	At2g47570	60S ribosomal protein L18 (RPL18A)	C.G.	S.X.	Please select
0.01	8e-2	38	Contig10937_at	Contig10937	-	-	3e-10	At1g20490	AMP-dependent synthetase and ligase family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig3349_at	Contig3349	-	-	2e+0	At3g07880	Rho GDP-dissociation inhibitor family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig10058_at	Contig10058	-	-	9e-3	At5g62930	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig3350_at	Contig3350	-	-	5e-2	At5g10220	ANN6 (ANNEXIN ARABIDOPSIS 6)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig3535_at	Contig3535	-	-	2e-2	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig7608_at	Contig7608	-	-	2e-18	At2g31660	SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig17826_at	Contig17826	-	-	3e-14	At4g32980	ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.39	5e-20	99	Arabidopsis thaliana	At3g22890	821861	APS1 (ATP SULFURYLASE 1)	encodes ATP sulfurylase, the first enzyme in the sulfate assimilation pathway of Arabidopsis.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.32	3e-31	137	Glycine max	Gma.2313.1.S1_at	AF452454.1	ATP sulfurylase	-	1e-83	At3g22890	APS1 (ATP SULFURYLASE 1)	C.G.	S.X.	Please select
0.59	0	1182	Oryza sativa	Os03g0743900	AK099593.1	-	ATP sulfurylase (EC 2.7.7.4)	1e-24	At3g22890	APS1 (ATP SULFURYLASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.41	2e-57	224	Populus trichocarpa	PtpAffx.43573.2.A1_at	CV270806	hypothetical protein	-	5e-84	At4g14680	APS3	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.76	0	1685	Triticum aestivum	Ta.9352.1.S1_at	CD870241	-	-	2e-14	At3g22890	APS1 (ATP SULFURYLASE 1)	C.G.	S.X.	Please select
0.14	8e-7	54	Vitis vinifera	1607986_at	CF606959	hypothetical protein LOC100252345	-	2e-49	At1g19920	APS2	C.G.	S.X.	Please select
0.48	1e-176	619	Zea mays	Zm.5050.1.S1_at	AF016305.1	ATP sulfurylase	-	1e-21	At3g22890	APS1 (ATP SULFURYLASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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