Gene omics information

Query gene ID	Contig2742_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.92	98.4	Contig2742_at	Contig2742	-	-	2e+0	At3g27070	TOM20-1 (translocase outer membrane 20-1)	S.X.	H.G.	Please select
0.22	24.2	Contig331_x_at	Contig331	-	-	8e-39	At1g56070	LOS1	S.X.	H.G.	Please select
0.22	24.2	Contig5339_s_at	Contig5339	-	-	3e-2	At2g16015	unknown protein	S.X.	H.G.	Please select
0.16	15.3	Contig672_at	Contig672	-	-	2e-30	At1g09200	histone H3	S.X.	H.G.	Please select
0.14	12.9	HS09B02u_s_at	HS09B02u	-	-	5e-8	At1g54290	eukaryotic translation initiation factor SUI1, putative	S.X.	H.G.	Please select
0.14	12.9	Contig13917_at	Contig13917	-	-	2e-13	At5g63370	protein kinase family protein	S.X.	H.G.	Please select
0.13	11.6	Contig2419_s_at	Contig2419	-	-	3e-7	At1g54290	eukaryotic translation initiation factor SUI1, putative	S.X.	H.G.	Please select
0.12	10.4	HZ01D23u_s_at	HZ01D23u	-	-	4e+0	At1g05900	endonuclease-related	S.X.	H.G.	Please select
0.10	8.4	Contig25262_at	Contig25262	-	-	1e+0	At5g44150	unknown protein	S.X.	H.G.	Please select
0.10	8.4	Contig17102_at	Contig17102	-	-	2e+0	At4g30250	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.4	99.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.4	99.2	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.8	99.1	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.7	97.7	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
5.5	97.6	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.0	97.2	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
4.8	97.0	GSM282027	Malting_day1_Legacy_rep2	GSE11200	Expression data from malting barley seeds
4.8	97.0	GSM261054	Bonus Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.7	96.9	GSM261055	Bonus Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6	96.8	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	2e-125	448	HS05I23r_s_at	HS05I23r	-	-	8e+0	At3g22435	XS domain-containing protein	C.G.	S.X.	Please select
0.36	2e-125	448	HS05I23r_at	HS05I23r	-	-	8e+0	At3g22435	XS domain-containing protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig7110_at	Contig7110	-	-	4e-1	At2g45860	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	HVSMEh0089A15r2_at	HVSMEh0089A15r2	-	-	1e+0	At3g14670	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig25788_s_at	Contig25788	-	-	1e+0	At3g14670	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig25788_at	Contig25788	-	-	1e+0	At3g14670	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig13245_at	Contig13245	-	-	1e-5	At2g41500	EMB2776	C.G.	S.X.	Please select
0.02	1e+0	34	Contig8593_s_at	Contig8593	-	-	2e+0	At3g17090	protein phosphatase 2C family protein / PP2C family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig8592_at	Contig8592	-	-	7e-1	At3g17090	protein phosphatase 2C family protein / PP2C family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At3g27070	822325	TOM20-1 (translocase outer membrane 20-1)	Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e+0	34	Glycine max	GmaAffx.62443.1.S1_at	AW099879	-	-	7e-1	At1g12470	Pep3/Vps18/deep orange family protein	C.G.	S.X.	Please select
0.41	1e-108	395	Oryza sativa	Os.12984.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	8e-1	36	Populus trichocarpa	PtpAffx.205824.1.S1_at	pmrna11520	hypothetical protein	-	3e-1	At2g17940	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.71	0	1035	Triticum aestivum	Ta.1871.2.S1_a_at	BJ294482	-	-	8e+0	At4g29020	glycine-rich protein	C.G.	S.X.	Please select
0.02	7e-1	34	Vitis vinifera	1618121_at	CF213691	-	-	6e-4	At4g23020	unknown protein	C.G.	S.X.	Please select
0.38	1e-77	289	Zea mays	Zm.2601.2.A1_at	CK827293	mitochondrial import receptor subunit TOM20	-	4e-2	At2g14500	F-box family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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