Gene omics information

Query gene ID	Contig2722_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.95	99.2	Contig2722_at	Contig2722	-	-	2e-32	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	S.X.	H.G.	Please select
0.29	35.5	Contig1326_s_at	Contig1326	-	-	7e-2	At1g22885	unknown protein	S.X.	H.G.	Please select
0.29	35.5	Contig333_M_at	Contig333_M	-	-	0			S.X.	H.G.	Please select
0.23	26.1	Contig24431_at	Contig24431	-	-	4e+0	At1g11475	NRPB10	S.X.	H.G.	Please select
0.20	21.1	Contig10570_at	Contig10570	-	-	6e-8	At4g38250	amino acid transporter family protein	S.X.	H.G.	Please select
0.19	19.6	Contig7314_at	Contig7314	-	-	5e-3	At1g76970	VHS domain-containing protein / GAT domain-containing protein	S.X.	H.G.	Please select
0.19	19.6	Contig3645_at	Contig3645	-	-	7e-9	At5g55850	NOI	S.X.	H.G.	Please select
0.18	18.2	Contig8444_at	Contig8444	-	-	3e-6	At2g28250	NCRK	S.X.	H.G.	Please select
0.17	16.9	Contig20398_at	Contig20398	-	-	8e-3	At2g42620	MAX2 (MORE AXILLARY BRANCHES 2)	S.X.	H.G.	Please select
0.17	16.9	Contig23393_at	Contig23393	-	-	3e-1	At1g54410	dehydrin family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.5	95.1	GSM431570	pathogen isolates: Mock inoculated control - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.4	94.8	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.1	94.1	GSM431551	pathogen isolates: Polymyxa graminis - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.9	93.4	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.8	93.1	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
2.7	92.7	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
2.5	91.9	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.5	91.9	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
2.3	90.9	GSM431571	pathogen isolates: Polymyxa betae - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
2.3	90.9	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	7e-61	234	HY02C19u_at	HY02C19u	-	-	5e+0	At4g15610	integral membrane family protein	C.G.	S.X.	Please select
0.02	5e-3	42	Contig3622_at	Contig3622	-	-	2e-2	At3g46900	COPT2	C.G.	S.X.	Please select
0.02	5e-3	42	Contig10676_at	Contig10676	-	-	3e-8	At2g20270	glutaredoxin family protein	C.G.	S.X.	Please select
0.02	5e-3	42	Contig3622_s_at	Contig3622	aleurone specific protein	-	2e-2	At3g46900	COPT2	C.G.	S.X.	Please select
0.01	8e-2	38	Contig9005_at	Contig9005	-	-	1e-14	At3g05280	integral membrane Yip1 family protein	C.G.	S.X.	Please select
0.02	8e-2	38	Contig11642_at	Contig11642	-	-	7e-8	At5g67540	glycosyl hydrolase family protein 43	C.G.	S.X.	Please select
0.02	1e+0	34	Contig25831_at	Contig25831	-	-	3e-1	At2g44290	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)	C.G.	S.X.	Please select
0.01	1e+0	34	AF414175_at	AF414175	-	-	2e-1	Atmg00740	-	C.G.	S.X.	Please select
0.01	1e+0	34	Contig8404_at	Contig8404	-	-	6e-5	At2g31040	ATP synthase protein I -related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	2e-32	141	Arabidopsis thaliana	At2g33040	817866	ATP synthase gamma chain, mitochondrial (ATPC)	F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:proton transport, ATP synthesis coupled proton transport;C:in 7 components;OBMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	2e-26	121	Glycine max	Gma.17344.1.S1_at	CD409198	-	-	7e-41	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	C.G.	S.X.	Please select
0.65	0	1045	Oryza sativa	Os10g0320400	AK072694.1	-	ATP synthase gamma chain, mitochondrial precursor(EC 3.6.3.14)	1e-48	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.29	4e-46	186	Populus trichocarpa	PtpAffx.249.66.A1_s_at	CV227553	hypothetical protein	-	2e-52	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.77	0	1945	Triticum aestivum	Ta.14480.2.S1_at	BU099921	-	-	3e-28	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	C.G.	S.X.	Please select
0.31	4e-33	141	Vitis vinifera	1611755_at	CB918301	hypothetical protein LOC100246670	-	4e-27	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	C.G.	S.X.	Please select
0.56	2e-159	561	Zea mays	Zm.5289.2.A1_a_at	AI600945	hypothetical protein LOC100274172	-	1e-30	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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