Gene omics information

Query gene ID	Contig2704_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig2704_s_at	Contig2704	-	-	9e-1	At5g47175	LCR3 (Low-molecular-weight cysteine-rich 3)	S.X.	H.G.	Please select
0.83	94.0	Contig8303_at	Contig8303	-	-	7e+0	At5g38400	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig15990_at	Contig15990	-	-	7e+0	At2g14910	unknown protein	S.X.	H.G.	Please select
0.63	80.3	Contig15087_at	Contig15087	-	-	8e-3	At5g14390	-	S.X.	H.G.	Please select
0.53	69.7	EBed02_SQ002_A05_at	EBed02_SQ002_A05	-	-	1e+1	At5g67400	peroxidase 73 (PER73) (P73) (PRXR11)	S.X.	H.G.	Please select
0.36	47.1	Contig7953_at	Contig7953	-	-	3e-28	At2g03510	band 7 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.1	99.7	GSM398273	Moroc9-75_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
11.6	99.3	GSM311259	kara_with_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
11.3	99.3	GSM398260	Martin_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
11.2	99.2	GSM398279	Moroc9-75_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
10.8	99.2	GSM398249	Martin_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
10.6	99.2	GSM398281	Moroc9-75_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
9.8	99.1	GSM398280	Moroc9-75_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
9.7	99.0	GSM372969	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.3	99.0	GSM372972	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.1	98.9	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.78	0	1655	Contig2707_s_at	Contig2707	-	-	7e-1	At5g47175	LCR3 (Low-molecular-weight cysteine-rich 3)	C.G.	S.X.	Please select
0.31	0	848	Contig2708_at	Contig2708	-	-	5e-2	At2g44920	thylakoid lumenal 15 kDa protein, chloroplast	C.G.	S.X.	Please select
0.27	0	809	Contig2712_at	Contig2712	-	-	6e-2	At2g44920	thylakoid lumenal 15 kDa protein, chloroplast	C.G.	S.X.	Please select
0.07	4e-23	109	Contig24911_at	Contig24911	-	-	6e+0	At5g26692	-	C.G.	S.X.	Please select
0.02	4e-23	109	Contig19417_at	Contig19417	-	-	6e-1	At2g33255	catalytic/ hydrolase/ phosphoglycolate phosphatase	C.G.	S.X.	Please select
0.07	4e-23	109	Contig6501_s_at	Contig6501	-	-	2e+1	At5g18540	unknown protein	C.G.	S.X.	Please select
0.06	1e-22	107	Contig9918_at	Contig9918	-	-	4e-2	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select
0.07	1e-22	107	Contig23257_at	Contig23257	-	-	6e+0	At3g43572	unknown protein	C.G.	S.X.	Please select
0.06	1e-22	107	Contig5838_at	Contig5838	-	-	1e-1	At5g34940	AtGUS3 (Arabidopsis thaliana glucuronidase 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	9e-1	36	Arabidopsis thaliana	At5g47175	3771459	LCR3 (Low-molecular-weight cysteine-rich 3)	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e-2	42	Glycine max	Gma.613.1.S1_a_at	BI424045	-	-	2e-1	At1g73890	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.03	2e-3	46	Oryza sativa	Os02g0550800	AK108711.1	-	Ammonium transporter	2e-1	At2g24550	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+0	36	Populus trichocarpa	PtpAffx.2481.1.S1_at	DN498060	-	-	3e+0	At3g06330	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.08	2e-32	141	Triticum aestivum	Ta.4595.2.S1_at	BJ268521	-	-	4e+0	At5g47100	CBL9	C.G.	S.X.	Please select
0.02	1e+0	34	Vitis vinifera	1620902_a_at	CD801216	-	-	6e-1	At1g67210	proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein	C.G.	S.X.	Please select
0.04	2e+0	34	Zea mays	Zm.6440.1.A1_at	AI691780	hypothetical protein LOC100191807	-	4e+0	At3g11340	UDP-glucoronosyl/UDP-glucosyl transferase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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