Gene omics information

Query gene ID	Contig2700_x_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	75.8	Contig2700_x_at	Contig2700	-	-	1e+0	At1g23890	NHL repeat-containing protein	S.X.	H.G.	Please select
0.75	89.5	Contig4296_at	Contig4296	-	-	5e-38	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	S.X.	H.G.	Please select
0.61	78.7	Contig6203_at	Contig6203	-	-	1e-3	At1g70110	lectin protein kinase family protein	S.X.	H.G.	Please select
0.58	74.9	Contig5724_at	Contig5724	-	-	4e-12	At1g06570	PDS1 (PHYTOENE DESATURATION 1)	S.X.	H.G.	Please select
0.56	74.3	Contig6910_at	Contig6910	-	-	9e-4	At5g43590	patatin, putative	S.X.	H.G.	Please select
0.56	74.3	Contig6213_at	Contig6213	-	-	8e-4	At1g05850	POM1 (POM-POM1)	S.X.	H.G.	Please select
0.56	74.3	Contig272_s_at	Contig272	-	-	5e-1	At3g45230	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.52	68.3	Contig3794_at	Contig3794	-	-	7e-31	At1g16890	ubiquitin-conjugating enzyme, putative	S.X.	H.G.	Please select
0.52	68.3	Contig3118_at	Contig3118	-	-	3e-68	At3g27240	cytochrome c1, putative	S.X.	H.G.	Please select
0.47	62.2	Contig3668_at	Contig3668	-	-	5e-1	At5g02030	RPL (REPLUMLESS)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
168.6	100.0	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
152.9	100.0	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.9	98.9	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
8.9	98.9	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
7.2	98.5	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
7.2	98.5	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.9	95.8	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.2	90.3	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
1.9	88.2	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
1.8	87.4	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.85	0	769	Contig2692_x_at	Contig2692	-	-	3e-1	At1g23890	NHL repeat-containing protein	C.G.	S.X.	Please select
0.67	6e-152	535	EBed02_SQ002_E13_x_at	EBed02_SQ002_E13	-	-	2e+0	At2g44745	WRKY family transcription factor	C.G.	S.X.	Please select
0.22	2e-9	61	HVSMEl0010O20f_at	HVSMEl0010O20f	-	-	1e+1	At5g38400	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Contig21738_at	Contig21738	-	-	1e-1	At3g13130	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Contig7497_at	Contig7497	-	-	8e-47	At3g19590	WD-40 repeat family protein / mitotic checkpoint protein, putative	C.G.	S.X.	Please select
0.03	2e+0	32	HVSMEf0013J01r2_at	HVSMEf0013J01r2	-	-	2e-2	At2g39415	F-box family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Contig23207_at	Contig23207	-	-	1e+0	At1g74870	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.03	2e+0	32	Contig20723_at	Contig20723	-	-	5e+0	At3g23805	RALFL24 (ralf-like 24)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig6807_at	Contig6807	-	-	8e-19	At2g20840	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At1g23890	839000	NHL repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMAP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	HgAffx.8155.1.S1_at	CB380346	-	-	5e-2	At4g27160	AT2S3	C.G.	S.X.	Please select
0.04	9e+0	32	Oryza sativa	Os12g0130400	9639.m00296	-	-	2e+0	At4g37610	BT5 (BTB AND TAZ DOMAIN PROTEIN 5)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e-1	36	Populus trichocarpa	PtpAffx.224108.1.S1_x_at	pmrna42346	hypothetical protein	-	2e+0	At5g41761	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.70	2e-97	355	Triticum aestivum	Ta.10147.2.S1_x_at	BQ608922	-	-	5e+0	At1g23890	NHL repeat-containing protein	C.G.	S.X.	Please select
0.04	9e-2	36	Vitis vinifera	1622092_at	CB002786	hypothetical protein LOC100263099	-	3e+0	At3g18800	unknown protein	C.G.	S.X.	Please select
0.02	8e+0	30	Zea mays	Zm.9930.1.A1_at	BM333380	-	-	1e+0	At5g37770	TCH2 (TOUCH 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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