CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig2688_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 94.0 Contig2688_s_at Contig2688 - - 1e-59 At5g08530 CI51 (51 kDa subunit of complex I) S.X. H.G.
0.80 92.5 Contig8289_s_at Contig8289 - - 1e-3 At2g30880 pleckstrin homology (PH) domain-containing protein S.X. H.G.
0.67 84.7 HVSMEf0019H18r2_at HVSMEf0019H18r2 - - 1e-2 At3g26520 TIP2 (TONOPLAST INTRINSIC PROTEIN 2) S.X. H.G.
0.43 56.4 HVSMEg0017L02r2_at HVSMEg0017L02r2 - - 4e+0 At4g17670 senescence-associated protein-related S.X. H.G.
0.42 55.2 Contig5837_at Contig5837 - - 1e-34 At1g15750 TPL (TOPLESS) S.X. H.G.
0.25 28.9 Contig2351_at Contig2351 - - 2e-7 At4g17830 peptidase M20/M25/M40 family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.2 96.3 GSM440962 Stressed lemma_Rep3 GSE17669 Gene expression in the barley spike during drought stress
4.1 96.2 GSM440972 Stressed awn_Rep1 GSE17669 Gene expression in the barley spike during drought stress
3.9 95.8 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8 95.7 GSM440961 Stressed lemma_Rep2 GSE17669 Gene expression in the barley spike during drought stress
3.8 95.7 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.6 95.3 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.3 94.6 GSM440966 Stressed palea_Rep1 GSE17669 Gene expression in the barley spike during drought stress
3.0 93.8 GSM440967 Stressed palea_Rep2 GSE17669 Gene expression in the barley spike during drought stress
2.9 93.4 GSM440973 Stressed awn_Rep2 GSE17669 Gene expression in the barley spike during drought stress
2.9 93.4 GSM238418 Endosperm 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 4e-92 337 Contig2686_at Contig2686 - - 2e-12 At2g28420 lactoylglutathione lyase family protein / glyoxalase I family protein C.G. S.X.
0.02 3e+0 32 Contig22334_at Contig22334 - - 2e+0 At2g40790 ATCXXS2 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) C.G. S.X.
0.03 3e+0 32 HVSMEl0012A13f_at HVSMEl0012A13f - - 2e-1 At3g60490 AP2 domain-containing transcription factor TINY, putative C.G. S.X.
0.02 3e+0 32 Contig21245_at Contig21245 - - 2e+0 At1g78870 UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) C.G. S.X.
0.02 3e+0 32 HVSMEb0006C19r2_at HVSMEb0006C19r2 - - 4e+0 At2g27260 - C.G. S.X.
0.02 3e+0 32 HV_CEb0006J06r2_at HV_CEb0006J06r2 - - 1e+0 At3g56490 zinc-binding protein, putative / protein kinase C inhibitor, putative C.G. S.X.
0.02 3e+0 32 Contig24884_at Contig24884 - - 1e-1 At5g10140 FLC (FLOWERING LOCUS C) C.G. S.X.
0.02 3e+0 32 Contig14540_at Contig14540 - - 2e+0 At4g19095 unknown protein C.G. S.X.
0.02 3e+0 32 Contig18014_at Contig18014 - - 2e-1 At3g55605 mitochondrial glycoprotein family protein / MAM33 family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 1e-59 230 Arabidopsis thaliana At5g08530 830752 CI51 (51 kDa subunit of complex I) F:4 iron, 4 sulfur cluster binding, NAD or NADH binding, FMN binding, NADH dehydrogenase (ubiquinone) activity, oxidoreductase activity, acting on NADH or NADPH;P:mitochondrial electron transport, NADH to ubiquinone;C:mitochondrion, respiratory chain complex I;OBMFPA - - - C.G. S.X.
0.24 5e-29 129 Glycine max Gma.10702.1.S1_at BE057108 - - 1e-53 At5g08530 CI51 (51 kDa subunit of complex I) C.G. S.X.
0.24 5e-113 408 Oryza sativa Os07g0645400 AK065185.1 - NADH dehydrogenase (EC 1.6.99.3) 0 At5g08530 CI51 (51 kDa subunit of complex I) C.G. S.X.
0.21 1e-66 254 Populus trichocarpa Ptp.2095.1.S1_at BP933053 hypothetical protein - 0 At5g08530 CI51 (51 kDa subunit of complex I) C.G. S.X.
0.40 0 924 Triticum aestivum Ta.28740.1.S1_at CD866215 - - 2e-156 At5g08530 CI51 (51 kDa subunit of complex I) C.G. S.X.
0.36 4e-51 200 Vitis vinifera 1611911_at CF212492 hypothetical protein LOC100266461 - 1e-121 At5g08530 CI51 (51 kDa subunit of complex I) C.G. S.X.
0.27 2e-124 444 Zea mays Zm.6628.1.S1_at BM078799 hypothetical protein LOC100273176 - 1e-169 At5g08530 CI51 (51 kDa subunit of complex I) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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