CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig2670_x_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 84.7 Contig2670_x_at Contig2670 - - 5e-20 At4g25820 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) S.X. H.G.
0.60 77.3 Contig4760_s_at Contig4760 - - 1e+0 At4g38700 disease resistance-responsive family protein S.X. H.G.
0.60 77.3 Contig4175_at Contig4175 - - 1e-19 At3g07100 protein transport protein Sec24, putative S.X. H.G.
0.50 66.9 Contig2670_s_at Contig2670 - - 5e-20 At4g25820 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) S.X. H.G.
0.46 61.0 Contig6995_at Contig6995 - - 2e-8 At5g57270 unknown protein S.X. H.G.
0.43 56.4 Contig11464_at Contig11464 - - 6e-20 At1g55740 AtSIP1 (Arabidopsis thaliana seed imbibition 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.6 98.6 GSM71153 Barke stress and unstress replicate 4 GSE3170 Barley single feature polymorphisms and drought stress gene expression
7.4 98.5 GSM261029 ABA-Late-rep3 GSE10328 ABA experiment
6.8 98.3 GSM261037 Dicktoo-subzero-rep2 GSE10329 Low temperature stress in cv. Dicktoo
6.8 98.3 GSM130803 JA, biological rep1 GSE5605 Expression data from barley under salinity stress and JA treatment
6.6 98.2 GSM68895 8 h control replicate 1 GSE3097 Barley1 salinity stress study
6.2 98.0 GSM71148 OWB-R unstress replicate 1 GSE3170 Barley single feature polymorphisms and drought stress gene expression
5.8 97.8 GSM261026 ABA-Early-rep3 GSE10328 ABA experiment
5.7 97.7 GSM161220 cold treatment rep2 GSE6993 Barley low temperature stress
5.7 97.7 GSM261038 Dicktoo-subzero-rep3 GSE10329 Low temperature stress in cv. Dicktoo
5.6 97.7 GSM261039 Dicktoo-deacclimation-rep1 GSE10329 Low temperature stress in cv. Dicktoo
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 2335 Contig2670_s_at Contig2670 - - 5e-20 At4g25820 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) C.G. S.X.
0.72 0 1326 Contig2669_at Contig2669 - - 8e-13 At4g25820 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) C.G. S.X.
0.81 0 1096 Contig2673_at Contig2673 - - 1e-17 At4g25820 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) C.G. S.X.
0.43 1e-157 555 Contig2671_at Contig2671 - - 4e-8 At4g25820 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) C.G. S.X.
0.41 4e-136 484 HVSMEb0004L16r2_at HVSMEb0004L16r2 - - 1e+0 At4g25820 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) C.G. S.X.
0.29 4e-102 371 EBem10_SQ005_L23_x_at EBem10_SQ005_L23 - - 7e+0 At5g03850 40S ribosomal protein S28 (RPS28B) C.G. S.X.
0.34 1e-74 280 Contig2672_at Contig2672 xyloglucan xyloglucosyl transferase - 2e-3 At4g25810 XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6) C.G. S.X.
0.13 2e-20 99 HVSMEh0085P21r2_x_at HVSMEh0085P21r2 - - 1e+1 At4g35263 unknown protein C.G. S.X.
0.13 2e-20 99 HVSMEh0085P21r2_at HVSMEh0085P21r2 - - 1e+1 At4g35263 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 5e-20 99 Arabidopsis thaliana At4g25820 828687 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) Encodes a xyloglucan endotransglycosylase with a clear preference for non-fucosylated xyloglucan polymer. - - - C.G. S.X.
0.27 3e-19 97 Glycine max Gma.8077.1.S1_at BU547877 - - 1e-41 At4g14130 XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7) C.G. S.X.
0.58 0 825 Oryza sativa Os06g0697000 AK120345.1 - Xyloglucan endotransglucosylase/hydrolase proteinA precursor (EC 2.4.1.207) (VaXTH1) 3e-12 At4g25820 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) C.G. S.X.
0.26 7e-23 109 Populus trichocarpa Ptp.6778.1.S1_s_at CN520892 hypothetical protein - 3e-23 At4g14130 XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7) C.G. S.X.
0.82 0 1195 Triticum aestivum Ta.28766.3.S1_at CA610853 - - 5e-20 At4g25820 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) C.G. S.X.
0.19 5e-11 67 Vitis vinifera 1619068_at CF215954 hypothetical protein LOC100250461 - 1e-13 At4g14130 XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7) C.G. S.X.
0.46 2e-177 621 Zea mays Zm.8890.1.S1_a_at BM379881 hypothetical protein LOC100191584 - 1e-8 At4g25820 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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