Gene omics information

Query gene ID	Contig26520_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	Contig26520_at	Contig26520	-	-	5e+0	At5g26610	D111/G-patch domain-containing protein	S.X.	H.G.	Please select
0.48	63.2	Contig10949_at	Contig10949	-	-	4e-6	At1g65730	YSL7 (YELLOW STRIPE LIKE 7)	S.X.	H.G.	Please select
0.39	50.5	Contig6228_at	Contig6228	-	-	8e-66	At5g10240	ASN3 (ASPARAGINE SYNTHETASE 3)	S.X.	H.G.	Please select
0.38	49.5	Contig4560_at	Contig4560	-	-	2e-1	At1g29000	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select
0.38	49.5	Contig19967_at	Contig19967	-	-	1e+0	At2g33850	unknown protein	S.X.	H.G.	Please select
0.35	45.1	HZ52M04r_x_at	HZ52M04r	-	-	4e+0	At2g16385	unknown protein	S.X.	H.G.	Please select
0.35	45.1	Contig16521_at	Contig16521	-	-	1e-1	At1g74260	PUR4 (purine biosynthesis 4)	S.X.	H.G.	Please select
0.35	45.1	Contig20268_at	Contig20268	-	-	4e-1	At5g12140	ATCYS1 (A. thaliana cystatin-1)	S.X.	H.G.	Please select
0.33	42.6	HZ52M04r_s_at	HZ52M04r	-	-	4e+0	At2g16385	unknown protein	S.X.	H.G.	Please select
0.31	38.6	Contig12722_s_at	Contig12722	-	-	2e-1	At3g18470	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.1	99.7	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
17.3	99.6	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
14.0	99.5	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
12.6	99.4	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.9	98.9	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.4	98.8	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.9	98.3	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
6.7	98.3	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.9	97.9	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.5	97.6	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	36	HS07F03u_at	HS07F03u	-	-	1e+0	At4g22560	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	HVSMEg0017H24r2_at	HVSMEg0017H24r2	-	-	3e-1	At3g20900	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	36	Contig5293_at	Contig5293	-	-	2e-25	At4g39220	ATRER1A	C.G.	S.X.	Please select
0.02	6e-1	34	Contig20945_at	Contig20945	-	-	2e+0	At3g49760	AtbZIP5 (Arabidopsis thaliana basic leucine-zipper 5)	C.G.	S.X.	Please select
0.01	6e-1	34	Contig11591_at	Contig11591	-	-	5e-27	At1g72040	deoxynucleoside kinase family	C.G.	S.X.	Please select
0.01	6e-1	34	Contig4597_at	Contig4597	-	-	2e-48	At1g17720	ATB BETA	C.G.	S.X.	Please select
0.01	2e+0	32	Contig11518_at	Contig11518	-	-	5e-9	At1g63500	ATP binding / binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	C.G.	S.X.	Please select
0.02	2e+0	32	Contig1784_at	Contig1784	-	-	4e-2	At3g46660	UGT76E12 (UDP-GLUCOSYL TRANSFERASE 76E12)	C.G.	S.X.	Please select
0.03	2e+0	32	HV_CEb0010M11f_at	HV_CEb0010M11f	-	-	5e-61	Atcg01060	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e+0	32	Arabidopsis thaliana	At5g26610	832729	D111/G-patch domain-containing protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:intracellular;MOFPBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e+0	34	Glycine max	Gma.389.1.A1_at	AW349686	-	-	3e+0	At5g14920	gibberellin-regulated family protein	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	Os07g0239500	AK103880.1	-	Conserved hypothetical protein	1e+0	At4g02440	EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e+0	32	Populus trichocarpa	PtpAffx.61283.1.S1_at	CK113016	-	-	4e-1	At5g40700	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	5e+0	32	Triticum aestivum	TaAffx.58065.1.S1_at	CA622699	-	-	3e+1	At5g60805	-	C.G.	S.X.	Please select
0.06	1e+0	32	Vitis vinifera	1611035_at	CF568866	-	-	3e-22	At3g44110	ATJ3	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	Zm.4450.1.A1_at	AI714900	-	-	4e-1	At1g02790	PGA4 (POLYGALACTURONASE 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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