Gene omics information

Query gene ID	Contig26512_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	78.7	Contig26512_at	Contig26512	-	-	2e-13	At1g08090	ATNRT2:1 (NITRATE TRANSPORTER 2:1)	S.X.	H.G.	Please select
0.50	66.9	HT11N18r_s_at	HT11N18r	-	-	1e+0	At1g16025	unknown protein	S.X.	H.G.	Please select
0.47	62.2	Contig15721_at	Contig15721	-	-	1e+0	At5g59360	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig18_s_at	Contig18	-	-	8e-2	At5g25940	early nodulin-related	S.X.	H.G.	Please select
0.40	53.1	Contig1321_at	Contig1321	-	-	3e-88	At5g37780	CAM1 (CALMODULIN 1)	S.X.	H.G.	Please select
0.20	21.1	Contig5198_at	Contig5198	-	-	5e+0	At4g02130	GATL6	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
144.7	100.0	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
93.8	100.0	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
87.4	100.0	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
66.9	100.0	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
1.0	76.4	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
0.7	68.9	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
0.1	39.4	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
0.1	39.4	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
0.1	39.4	GSM161220	cold treatment rep2	GSE6993	Barley low temperature stress
0.1	39.4	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.71	0	1237	U34198_at	U34198	-	-	1e-12	At5g60770	ATNRT2.4	C.G.	S.X.	Please select
0.72	0	1176	Contig17222_at	Contig17222	-	-	4e-12	At1g08090	ATNRT2:1 (NITRATE TRANSPORTER 2:1)	C.G.	S.X.	Please select
0.71	0	1150	AF091115_at	AF091115	-	-	6e-8	At1g08090	ATNRT2:1 (NITRATE TRANSPORTER 2:1)	C.G.	S.X.	Please select
0.01	1e-1	38	Contig9986_s_at	Contig9986	-	-	4e-1	At4g00895	ATP synthase delta chain-related	C.G.	S.X.	Please select
0.02	1e-1	38	HM08L19r_at	HM08L19r	-	-	3e-2	At3g09980	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	38	Contig13690_at	Contig13690	-	-	3e-2	At5g28610	-	C.G.	S.X.	Please select
0.01	1e-1	38	Contig9987_at	Contig9987	-	-	3e+0	At5g42060	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig12084_at	Contig12084	-	-	6e-3	At4g21740	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig16086_at	Contig16086	-	-	6e-3	At4g39720	VQ motif-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	2e-13	77	Arabidopsis thaliana	At1g08090	837327	ATNRT2:1 (NITRATE TRANSPORTER 2:1)	High-affinity nitrate transporter. Up-regulated by nitrate. Functions as a repressor of lateral root initiation independently of nitrate uptake.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.20	1e-40	169	Glycine max	Gma.8482.1.S1_at	AF047718.1	NRT2 protein	-	1e-27	At5g60770	ATNRT2.4	C.G.	S.X.	Please select
0.61	5e-118	426	Oryza sativa	Os02g0112600	AK109733.1	-	Membrane transporter	2e-8	At1g08090	ATNRT2:1 (NITRATE TRANSPORTER 2:1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	2e-2	42	Populus trichocarpa	Ptp.5713.2.S1_a_at	AJ557585.1	high affinity nitrate transporter	-	7e-6	At5g60770	ATNRT2.4	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.73	0	1229	Triticum aestivum	Ta.264.1.S1_at	AF332214.1	high affinity nitrate transporter	-	2e-11	At5g60770	ATNRT2.4	C.G.	S.X.	Please select
0.02	3e-1	36	Vitis vinifera	1620686_at	CF510724	hypothetical protein LOC100255018	-	1e-6	At1g09610	unknown protein	C.G.	S.X.	Please select
0.63	1e-136	486	Zea mays	Zm.10344.1.S1_at	AY129953.1	nrt2.1 protein	-	2e-4	At1g08090	ATNRT2:1 (NITRATE TRANSPORTER 2:1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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