Gene omics information

Query gene ID	Contig26498_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.47	62.2	Contig26498_at	Contig26498	-	-	2e-2	At4g00960	protein kinase family protein	S.X.	H.G.	Please select
0.75	89.5	Contig8406_at	Contig8406	-	-	4e-2	At3g10040	transcription factor	S.X.	H.G.	Please select
0.48	63.2	Contig10941_at	Contig10941	-	-	2e-1	At3g48340	cysteine-type endopeptidase/ cysteine-type peptidase	S.X.	H.G.	Please select
0.39	50.5	Contig10315_at	Contig10315	-	-	1e+0	At4g24015	zinc finger (RING-H2 type) protein-related	S.X.	H.G.	Please select
0.36	47.1	Contig12779_at	Contig12779	-	-	2e-2	At4g35470	leucine-rich repeat family protein	S.X.	H.G.	Please select
0.36	47.1	Contig9868_at	Contig9868	-	-	1e-18	At2g36895	unknown protein	S.X.	H.G.	Please select
0.34	43.6	Contig12580_at	Contig12580	-	-	1e+0	At5g28640	AN3 (ANGUSTIFOLIA 3)	S.X.	H.G.	Please select
0.33	42.6	Contig17228_at	Contig17228	-	-	1e+0	At3g44070	beta-galactosidase	S.X.	H.G.	Please select
0.31	38.6	Contig863_s_at	Contig863	-	-	3e-6	At3g02720	DJ-1 family protein / protease-related	S.X.	H.G.	Please select
0.30	37.0	Contig10185_at	Contig10185	-	-	8e-1	At3g54720	AMP1 (ALTERED MERISTEM PROGRAM 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.7	99.7	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.1	99.2	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.0	99.2	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.9	97.1	GSM261041	Dicktoo-deacclimation-rep3	GSE10329	Low temperature stress in cv. Dicktoo
4.5	96.7	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.3	96.4	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
4.3	96.4	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
4.2	96.3	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
4.1	96.2	GSM261058	Xantha b-12 Cotrol rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.0	96.0	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-5	50	Contig20782_at	Contig20782	-	-	4e-5	At4g23230	protein kinase family protein	C.G.	S.X.	Please select
0.04	1e-5	50	Contig14572_at	Contig14572	-	-	3e-5	At4g21410	protein kinase family protein	C.G.	S.X.	Please select
0.04	4e-5	48	Contig21140_at	Contig21140	-	-	1e-7	At4g27300	S-locus protein kinase, putative	C.G.	S.X.	Please select
0.04	6e-4	44	Contig20735_at	Contig20735	-	-	7e-2	At4g23150	protein kinase family protein	C.G.	S.X.	Please select
0.05	2e-3	42	Contig18728_at	Contig18728	-	-	6e-6	At1g61610	S-locus lectin protein kinase family protein	C.G.	S.X.	Please select
0.04	2e-3	42	HV_CEb0021G08r2_at	HV_CEb0021G08r2	-	-	2e-2	At4g04510	protein kinase family protein	C.G.	S.X.	Please select
0.02	1e-2	40	Contig14415_at	Contig14415	-	-	4e-14	At3g01490	protein kinase, putative	C.G.	S.X.	Please select
0.08	4e-2	38	Contig25306_at	Contig25306	-	-	1e-3	At4g00970	protein kinase family protein	C.G.	S.X.	Please select
0.03	1e-1	36	Contig20719_at	Contig20719	-	-	3e-2	At3g17840	RLK902	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-2	40	Arabidopsis thaliana	At4g00960	827937	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	7e-3	42	Glycine max	Gma.7637.2.S1_at	BG790453	-	-	2e-14	At4g02010	protein kinase family protein	C.G.	S.X.	Please select
0.21	1e-32	141	Oryza sativa	Os09g0551400	9637.m03224	-	-	2e-5	At4g23280	protein kinase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e-2	40	Populus trichocarpa	PtpAffx.1873.2.A1_at	CK094017	hypothetical protein	-	9e-8	At4g27300	S-locus protein kinase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	5e+0	32	Triticum aestivum	TaAffx.23205.1.S1_at	CA739205	-	-	3e-2	At4g23230	protein kinase family protein	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1611943_at	CF202144.1	-	-	9e+0	At5g35715	CYP71B8	C.G.	S.X.	Please select
0.04	8e+0	30	Zea mays	ZmAffx.116.1.A1_at	AI665610	-	-	3e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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